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53-4316-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24203778 [Map]; Strand: w
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 841; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -3911; Region: intergenic
    Flanking Genome Sequence: 53-4316-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TCAGAAACCT CTGTTTTCCA AGTTTTTGCT 
    ACAAATGTTC TATGAATACA AGTCAATTAA TGTAAAAAAA ATTAAAACTC 
    GCATTAGTTA AAATCTTTAT AATTTGACAT TAATGCTCTC ATTAGCAAGT 
    GACAAGATCA AATCCATTTT ATCTAGGGAT CATCGCAGTT AATCTTTATG 
    GTCATTGCAT TGAGCTCTCG TTTTAGAAGT ATGTAGTAAC TTCTGTATGC 
    GGAGGAGTCA ACGGTAGTGG TTGTTGTGGA GCTTTTGGAG TGCGACGGAG 
    ATAGGTTGAT GAGGCTGGCA AAGATTGAGT TTGGGAATAT CGTGGTAGGC 
    AAGGCACTGA GGTTCTCGAA GGAGATATCT AGGACTAGGA TTGATTTTTT 
    TTGGGGTTTG ATGCAGAAGC TCAAGCATTT TTCTCCATCT CTTGGTGTAG 
    GTCTCAGGGA AACAACATTG CAAACATCTT GGACTCATTT AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24203771 [Map]; Strand: w
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 834; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -3918; Region: intergenic
    Flanking Genome Sequence: 53-4316-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTA 
    TTGTTATACT TGTAGGGCTG CAAATTGGAA AAAGAAAAAA CACTGCTAAA 
    ACGCCGTCGT TTTCGAAAAT TAGTCATTAG AGGCCCACGG GAACACGATA 
    TATGGGCCTA AGTTTCGGTC AATTCTATAT AAGAAAATGA CAATACTGTC 
    CTAAATAATA GAGGCACAGA GACAGAGAAA AGCT

AT5G60110.1

Model type
Protein coding
Short Description
pumilio 18
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 18 (PUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 19 (TAIR:AT5G60180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60120.2

Model type
Protein coding
Short Description
target of early activation tagged (EAT) 2
Computational Description
target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.2).
Link
InterPro Scan - TAIR