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53-4356-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25266340 [Map]; Strand: c
      • AT5G62950.2 - [+] show detail - RNA polymerase II, Rpb4, core protein
        Distance: -2473; Region: intergenic
      • AT5G62960.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -2942; Region: intergenic
    Flanking Genome Sequence: 53-4356-1 - 3-prime edge 
    CTCTTTTGGC TTCGTTTGCA ACAGCTGTCT CTCTGTCACA CATGAATCCT 
    CTTCTTAACC TACGTAACCG ACCTGTAGCC TCACCTGTTA CATATGACAG 
    AAAAATAACA AATTTAATTT ATTTAGCTAC TAGTTTCATC CGTAGCCAGT 
    ATCTATTAAT GTATATGACT AAAATAAATC TAAAATTTTA ATCATTGGAA 
    ACTCATTTTG GTGTTCAAAG AAATATTTAG TAACAAGTAA ATCATAGTTA 
    ATCAGAATGT CAAGTTAAAA TTAGAATCAG GAATATGACA GCATTTTTCT 
    TTGACGACAA ATGTAACAAA AATCCAAAAA ACTGAAGAAA AAATAAACTG 
    CCGACAGAAT TTGTTCCCTC ATAACTCACA CATCTTTGTC TTTCGCTAAT 
    CGCTACAATC AATTTGATTA ATTGGAAAAA GTTTTCTTTA ACAAAGCCAT 
    GAAAGCCGCT ATTTGATAGA TTCTCAAAAC AGGTGCAAAA GATTTGATTA 
    ATTGACTCGA GATGATGTAT GATACACATA TTTGGTGAAT GCAATAGTCA 
    TTATATATCA CATTTAAAGT ATCAATTTTA TTAAAGAAAA GATATGCGTA 
    AATAGCATTG GCTGTTGTAG GACAAGAGAC AAAAGTCACA ACATTAGGCA 
    TCAAATCTTT TGGAATTACC AATAAGCAAT TCCCTANGTT GGTCCACTAC 
    TAATCGTATA TTTTG

AT5G62950.2

Model type
Protein coding
Short Description
RNA polymerase II, Rpb4, core protein
Computational Description
RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, nucleotide binding, catalytic activity; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1); Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 4; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G62960.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR