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53-4376-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19662808 [Map]; Strand: c
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -191; Region: promoter
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: -9; Region: promoter
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: -36; Region: promoter
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: -36; Region: promoter
    Flanking Genome Sequence: 53-4376-1 - 5-prime edge
    CAGAGAGACC AACTCATTCT CTCCTCCAAT AATCGCGATA AGGAAGAAGA 
    AACTTGTTGG CTTTATTGAA CCGGTCCAAT TCTCAACCGA ACTCCGGTAT
    TCCAAATTAA AAGCCAGCAA TCAATAATTG AATCTCGAGC CCACGACGGT
    TTGATTGGTT TAGCCATTTC TCGGCGCTAA ATATAATTTA TTAAAATGAT
    GATTATTGCG AGAAGAAAAG ATCTTTCTTT GATTTTTGCT TGTGGATTTG
    GATTTCCAGT TTCCAATTCT CTCAAATTTG CAATCCACCT TCAAATTCAC
    ACACATCTTC AACAGCTACC TTTTCGGGAA CTTGCTAGAA TT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19662924 [Map]; Strand: c
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -307; Region: promoter
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4376-1 - 3-prime edge
    TCTCTCTGCA GCACCCATGG GGTCTCCTCT TCCATAGCTC TCACTTATGG 
    CTTTCGCCAT AGAAGAAGAT CCACCTTCCG TATTTTCGCC ACCTCTGACG
    GATTAGAACC CAAGGACGAC CCGCCGGAAT CTCCTCTCCC TTCCTCATCC
    TCTGCTCTCG GTAAAGACTT GAAAAAGGTC CGCCTTTTTT CTATATCATT
    TACGATTTTT CTGTTGAAAC CATAGGAAGA CATGAAAATG AAAATGCACC
    ATGTTAGATT GGTCTCTAGT GCTTGAACCT GTTGAAAGAG TTGCTCAAGC
    T

AT2G48060.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.1

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.2

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.3

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link
InterPro Scan - TAIR