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Mutant Lines
53-4376-1

53-4376-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 19662808 [Map]; Strand: c
  - AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -191; Region: promoter
  - AT2G48070.3 - [+] show detail - resistance to phytophthora 1
    Distance: -9; Region: promoter
  - AT2G48070.1 - [+] show detail - resistance to phytophthora 1
    Distance: -36; Region: promoter
  - AT2G48070.2 - [+] show detail - resistance to phytophthora 1
    Distance: -36; Region: promoter
Flanking Genome Sequence: 53-4376-1 - 5-prime edge
```
CAGAGAGACC AACTCATTCT CTCCTCCAAT AATCGCGATA AGGAAGAAGA 
AACTTGTTGG CTTTATTGAA CCGGTCCAAT TCTCAACCGA ACTCCGGTAT 
TCCAAATTAA AAGCCAGCAA TCAATAATTG AATCTCGAGC CCACGACGGT 
TTGATTGGTT TAGCCATTTC TCGGCGCTAA ATATAATTTA TTAAAATGAT 
GATTATTGCG AGAAGAAAAG ATCTTTCTTT GATTTTTGCT TGTGGATTTG 
GATTTCCAGT TTCCAATTCT CTCAAATTTG CAATCCACCT TCAAATTCAC 
ACACATCTTC AACAGCTACC TTTTCGGGAA CTTGCTAGAA TT
```
3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19662924 [Map]; Strand: c
  - AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -307; Region: promoter
  - AT2G48070.3 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon1 (CDS)
  - AT2G48070.1 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon1 (CDS)
  - AT2G48070.2 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 53-4376-1 - 3-prime edge
```
TCTCTCTGCA GCACCCATGG GGTCTCCTCT TCCATAGCTC TCACTTATGG 
CTTTCGCCAT AGAAGAAGAT CCACCTTCCG TATTTTCGCC ACCTCTGACG 
GATTAGAACC CAAGGACGAC CCGCCGGAAT CTCCTCTCCC TTCCTCATCC 
TCTGCTCTCG GTAAAGACTT GAAAAAGGTC CGCCTTTTTT CTATATCATT 
TACGATTTTT CTGTTGAAAC CATAGGAAGA CATGAAAATG AAAATGCACC 
ATGTTAGATT GGTCTCTAGT GCTTGAACCT GTTGAAAGAG TTGCTCAAGC 
T
```

AT2G48060.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.1

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.2

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.3

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link: InterPro Scan - TAIR