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53-4389-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21960903 [Map]; Strand: c
      • AT5G54110.1 - [+] show detail - membrane-associated mannitol-induced
        Distance: 302; Region: intergenic
      • AT5G54130.2 - [+] show detail - Calcium-binding endonuclease/exonuclease/phosphatase family
        Distance: -1697; Region: intergenic
    Flanking Genome Sequence: 53-4389-1 - 5-prime edge 
    CGNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCG GTCAGTACTT GGGTATAAGT CTTTTTTTTG 
    TATTAGTGGG TATCAGTCTT TTATAGGTCA CTCTTGTGGA CCTTTAGTTT 
    AGAGTCTGAT CAAAATAAAA AAACCACTTT AAAACTAAAA ATAAACATGG 
    TGACAATTGA CATATCAGAA AATGGTAGCC TATCATCCAA AACAAATTTG 
    TACTTTGGTT TGTGAAATGT TCCAATCAAA TTGATCATGG TTGGGGAAAC 
    TTTATAATTG TCCACAAAAC CATCATTCTT ATTCTAACCT TAATGACTCA 
    TTTCTAAGAA ACGTTTAACG AATGGTATAA CAGGATTTTT CATTTGTAAC 
    TAAATACTGA ACAAACTCTG GTTCGATTCT AGATCAACTA AAAACGACCG 
    AAACAAAATT TGATGAAGGA GAAAAAACCG GCATGAATCA CACAACAAAC 
    AGAGACATAC AAGAACCACA AAGTAATCGT CTAGAGATAA ATACATAATC 
    GAGGGATAAT AAATTATGTA CATGATCTGC AGAACAAGTC CACATTGCTC 
    TCTGCGTTTA GGACAAAGAA TCTACGGATT CGACTTGTTG CCGANCAAGG 
    GACTTNTNTC TTCTCTCCTT CTGATAGATG ACACAAACTT TGGNGAATNT 
    NTGGGAGAAN GAGGACCANC NNTNAACNGA CNANAGATNA NNNNNNNGGN 
    CCGNCCCCNC GCTNNNNNNN NAAAAAAAAA AAA

AT5G54110.1

Model type
Protein coding
Short Description
membrane-associated mannitol-induced
Curator Summary
Encodes a highly polar protein with more than 60% hydrophilic amino acid residues that is associated with the plasma membrane. It has limited secondary structure similarity to VAP-33 from Aplysia, which may be involved in membrane trafficking.
Computational Description
membrane-associated mannitol-induced (MAMI); FUNCTIONS IN: structural molecule activity; INVOLVED IN: response to osmotic stress; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: PapD-like superfamily protein (TAIR:AT4G21450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G54130.2

Model type
Protein coding
Short Description
Calcium-binding endonuclease/exonuclease/phosphatase family
Computational Description
Calcium-binding endonuclease/exonuclease/phosphatase family; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 395 Blast hits to 395 proteins in 101 species: Archae - 0; Bacteria - 4; Metazoa - 160; Fungi - 17; Plants - 147; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR