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53-4395-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8842975 [Map]; Strand: w
      • AT4G15470.1 - [+] show detail - Bax inhibitor-1 family protein
        Distance: -592; Region: promoter
    Flanking Genome Sequence: 53-4395-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TTTAAACACT ATTTACTGGT GCGTTATTGT 
    GAATCCATGT CCTAACTTTT ATATTTTGTT TGTATAAATT TTTTAAATTT 
    AATTTGTAAA TTTTTGGAAA TCTTATTATT TGGGTTTCAA TAAAATTTTA 
    ACCTTACTTT TTAAATTTGA CTTTCATATA TCTCATTGCT TTCCAATCAA 
    AATTTGTCAC ATGTTTTTAG TTATTTGACG AAGAAAGAAT TGATCGAGTA 
    TAACCCTAAC CCAAATTGTT ATTCATTTAA TTTATTCTAA CTGGTTTAAA 
    TGTTAAATAA ATTATGGGAT GAATTGTTTG GAATAATCCA TGTTCATCAA 
    ATTTAAATTA ATTGACCAAT TTATACATAA ATTTCTACTT CACAAATAAA 
    AAAGAGTTAA ATATGTCTAC CCATGAACAC AGAAATATGT TTCCTCAAAA 
    TAATTAACAG ACTTTTTCTC TATTGGTCTT TCATATAAAG CTAACACTAA 
    CAGCGTTTTA GACATGAATA ATACAACGCG TTATCGTAAC AAATCATGTC 
    CGTTCATGTT GCCACGTGTA CATCATATTG TTAGATTAGA GGGAAATGAC 
    TCGTCGCCTT CGTCAACACA GAATATATAA ATCTCAAAAT TCTATAATTC 
    GATAATTTTT CCCAGAATCA ACCAGATCTG CTTTCGAAGA CGAATCTAGC 
    TATTAGCCAT GGAGAAACCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8833174 [Map]; Strand: c
      • AT4G15430.2 - [+] show detail - ERD (early-responsive to dehydration stress) family protein
        Distance: 1670; Region: intergenic
      • AT4G15440.1 - [+] show detail - hydroperoxide lyase 1
        Distance: -2321; Region: intergenic
    Flanking Genome Sequence: 53-4395-1 - 3-prime edge 
    TNAAAACGGN NGAGGTATTT TACNGACCGT TACCGACCGT TTTCATCCCA 
    TAGTGAAAAC GTAAATCATG TCTTCTGAGT CGTGAAAGCT GAAGTCGAAA 
    GTGTTTTAGT TTAGGGTAAT TTCTGAAATG GGCTTTGCTT CANGTTGCTG 
    CAGGTGGAAT CCTAGGATAT TTACATATTT GGAGAGAAGC AAAAGTTATA 
    GCCTTATAAG ATTTTTGTCA TTGTTATGAT TNATCAATTC TTAAGTTGTA 
    CGTATAATTT ATATTTGTCT TCGGTTAATA AGTTATTCTC ATTGTTTAGA 
    ACTACAACTC TTTCTCACAT TGCTCTGAAC TGAATCGCCT ANAATTTGCT 
    TCTTCTTGTT TCTTAAACGC TAAGTGGTAA CTAAACATTA TTCATAGTGT 
    CTGAGTATTA TCAGATNAAC ANNACCATAN NTAATCGNTT CATTTNNTAC 
    CANANNNAGA CCATTAANGG TTCTTAATTC NGNATTGCGA NNACATAANC 
    TACACATGCT TATGTCNNGC TATCTANNNN ANATGACNAC NGNATGCTAG 
    ACNNTGNNTC GCTAGGGGTN AANTTCATNA ANTGACNGAA ATTGGATTGA 
    ATAGTCAAAT CATGANTTAN CCGACCTTNC AAAGATTGNC TANGNAAANT 
    NANACCGCAA NCNATGANCA ATCAGGTGAT TGTGATNTTN NTCTCAAATA 
    TCCTATCATT TACATNCTTT GNGCACTTGN TACATANGAA CATCCCAGCT 
    AGTNTACCAT AGGATGAANA ACAT

AT4G15430.2

Model type
Protein coding
Short Description
ERD (early-responsive to dehydration stress) family protein
Computational Description
ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT3G21620.1); Has 1442 Blast hits to 1273 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 688; Plants - 448; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G15440.1

Model type
Protein coding
Short Description
hydroperoxide lyase 1
Curator Summary
Encodes a hydroperoxide lyase. Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase.
Computational Description
hydroperoxide lyase 1 (HPL1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: fatty acid metabolic process, response to wounding; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403); BEST Arabidopsis thaliana protein match is: allene oxide synthase (TAIR:AT5G42650.1); Has 6712 Blast hits to 6702 proteins in 615 species: Archae - 25; Bacteria - 392; Metazoa - 3265; Fungi - 548; Plants - 2246; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G15470.1

Model type
Protein coding
Short Description
Bax inhibitor-1 family protein
Computational Description
Bax inhibitor-1 family protein; CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein (TAIR:AT1G03070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR