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53-4397-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11134 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -770; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -679; Region: promoter
    Flanking Genome Sequence: 53-4397-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTT CTATTACTCA AATTATTGCT CGAGTGTTAG 
    GTTTGCTTGT ATCTATCCTT GTTTTTTCCG TGATTATGTA ATTTGATTGG 
    CCCTTGTAGT CGAGATGTTT GTAGCCTTGA TGGCTCGGGG AAACTCAGAG 
    AGAGAGTTGG TCCCGGTTGC ATTCTCCGCT GTCTTACTGA TACCATAAAC 
    ACCGTTTGAT CCATGATTGC CTCTATTGTA TACTTGATGC TTCATGATAT 
    ATGCATTCTC CATGTCTCTG TTTCATGTTT ACGCATAAAA ATATTATCAA 
    GCCTCAAACT TGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11128 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -764; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -673; Region: promoter
    Flanking Genome Sequence: 53-4397-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    ACAAGAAACC AGAAATCGAA ACGAAACGGA ACGAAACACA AAATTTCCTA 
    ATTAATCTTG TGTTTAATTA AGAAAAGAAA ACACAAAAAA GTTGAAAGGT 
    TTAGTGGTGC ATCCACGTAG CAAGACATTT TAGGTGTACN GTCGACCATA 
    TTGTTGGCCG TTTATAGAGC ATCATCCACT CTCCTCGACG AGCAAGATCA 
    TGCCGCCTCT GGATTCTTCT CATTCATCGG TGTTCCTGCG ATCCCCTCCG 
    TAGCACCCTC CGCCTCCTCA GCGCCTTCCC CGTGTAAATT ACCGTTCTGC 
    ATGTTTAGAA ATTTGACGTG GAAATTGTTG CAATGTAACT TTCTGTGATA 
    CTTGGCTATT GTTGCAATGT AATTTTCATT GAAGTCAGTC ACCAATGACC 
    ATTGAACAGA TGTTTTAAAA TGTCCACGTA AGCAATTGTT GTTTGGAACG 
    ATTTTCGGTT AGCATTCGTG CCTTTTTTAC CTCAATAAAA GGCCGTGGCA 
    TTAACTCACT TGTCTTGAGA CGTTATGTCG TTAAAACCAA GCCCAAAGTT 
    AATTTCGGCC CAAATCGTTT TCAACTTTCC CGCCGTCTTT TAACTTTTTA 
    GTTTTTTGGT GATGGTTTTG GGGGGAAAGA AAACAGAAAA TNTAAAAATA 
    AAATTTCCGC ACTCCCGACT CTTGGTGTGG TAGGCAATTC TGAATCGCGA 
    NGGTTAGTTC TNCGGC

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR