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53-4410-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24835144 [Map]; Strand: w
      • AT5G61820.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-4410-1 - 5-prime edge 
    TANTNNACGN GACNANCTGA CAAATCGGTT ATACGATAAC GGTCGGTACG 
    GGATTTTCCC ATCCTACTTT CATCCCTNTC CGTAGACAAT ATACCCATCA 
    AATGGCATCA CTAAGCTCTT TTTCTTAACG TCAACGCATC CATCGCCATT 
    GGTTTTGCAC GGTTTCACCT CGTATTCCAC CTGAAAATCA CAAAGACCCG 
    GAAAATTATT AGAGAATGAA GTAGAAGTAA CGGCATTAAG CAGATATGAA 
    AGTTCTTACT GACATGGCAA ATATGTTCTT NNTTATCTCC TTTTGATCTT 
    TCCCAANAAT CTGTAACATC GAAAANNGAA ACCTTANCGG GCAAAACCGA 
    GCTGTCCCAA TCAAAANATC TNACGGTATA CTTCAAATAC AGNAGTTCTA 
    GNTNNNTNCC CATTGTCAAA GCCNGNTNNT NNACCCGACA NTGGNTNTNA 
    TCATANGCCG CCGNGTAAAA NNCTCNNANG GATNCNANGN ACTNATAGGG 
    ATAGANCGAT CCCCNATTNA NATGGATATC ATTTNTNCNN NATNCNTNCA 
    NNCCNTTTTT CGNCANCCCG ANAACGANNN NTANANGCCN NNCGGNGNGA 
    NTNAANNNGA ACAAAGCTCA ANGANANCNC ATCNAGAANN TATACANCAC 
    ANAGACNGGC NNNNNAGGNN GAGCGNCANG CNANNAGGNA NNGNGCGCAG 
    NNGNNAGNAC GTCANCTANA ANAGTNANNA AANNNNNNGA GATNANNTAG 
    NNGGNAATAN TNNATTGNAN NNCTNCNCTN ATNNTANNAT ATATANTAAN 
    TCACNANNNA CNNNAANCNG NCNCNATNNC ANGNNAATNN AGCNNCATNN 
    NANTNTNNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24835147 [Map]; Strand: w
      • AT5G61820.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-4410-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAGG 
    TAGCTCACCA GCACGCTGGT GGTATCGGTG GTGCTCTATA CCGAGAGGTA 
    ACTAAGAGAC TGATTTAGTT TAGGCTACTG CAAAACGAAA AGATTGAAAC 
    TTTGTTATTG AATTGAGACT CTTGTTGTGT TGTGGATCAG AACGGTGAAG 
    GGATATGCGC NTTCAATGCC GAAGTATGGC AATGGAGATG AACCTGGAAA 
    CGAAGCTGGT TACATTGTTG GAATGTCGTC TTGTTATCCA GCTGATCCAG 
    TGAAAGTGAG CTATGGAGAG ACATTGACTT TGGAATCTAA TTACAGTAAT 
    GCCGTTGGTC ATACCGGAGT TATGGGACTC TTTTACATCC TCGTTGCTCA 
    GCAGCTGCCG GAACCAGATA GCTCCTTGCC TAATAAACAA CATTTTGAGG 
    TAATCACTCC ACCCGGTACC AGAACTCGGT TAAGGTCAAA CCGGTTACGA 
    TACATATACA GTGTATTGCC ATGTGATTAT TTAACTGACG TTAATATCTC 
    TCACTTCCTT GTAGGCACCT GCGAGAAGCT

AT5G61820.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR