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53-4417-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28578195 [Map]; Strand: c
      • AT1G76150.1 - [+] show detail - enoyl-CoA hydratase 2
        Distance: -495; Region: promoter
      • AT1G76160.1 - [+] show detail - SKU5 similar 5
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: 53-4417-1 - 5-prime edge
    TAGGCCCCGG GAAAACTAAC AAAATCGGTT ATACGATAAC GGTCGGTACG 
    GGATTTTCCC ATCCTACTTT CATCAAATGA CGGAGAGATG GTCAGCCAAA
    CCAGCTGACG CGTTCTTGAG GCGGGTTTCT TGTTTTATAC ACATTCTTCA
    TTTTGCTAAT GAATGANAAG AGTTTATGTT AAAATCAGTA TATCAGTTTG
    TAACGATCTC AGCTCGAGGT CTCATTCTTG ATTCTTATAT TCTTTCTTTT
    TCTATGGAAC GAAACATTTA TTCAATATAA TTCCACAGTT TCATCGTAAA
    GCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28578197 [Map]; Strand: c
      • AT1G76150.1 - [+] show detail - enoyl-CoA hydratase 2
        Distance: -497; Region: promoter
      • AT1G76160.1 - [+] show detail - SKU5 similar 5
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: 53-4417-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    ATATCTAACC ACCAGCTCAA AGCGGTCTGG TGCTGCGACC ACTGGCTCTC
    CCGCAGAGAA GAGCGTTCTT GGGGATTGGA TATTCATCTC TGAGAGAAGT
    TGAGGGTGTG TACACACGTA AATACAATTG TTGTCCTAAG TATTGCCTCG
    CCCAGAACTC GGATCTTAGA TTCCACATTC CTACGTTGTC GAGTGCTATC
    AATATAGCCG TCCATGAGCT TGGGTATACC TGTATATGAA TGTTAATCAA
    ACGGTTCACA TCTGACAAAA CAAAACATGA TTAGATTATG GCTTTTAGTA
    TACAGAAGCC GTGGTTTACC TGAACGGTGC AGCGAGCGAC TGCATCGCGT
    AGGTTATACT CGTTCCTACT ATCTGGACTC CACTGTCCAC CATCCATTCT
    GTATCACAAG AACCATCTTT AGTCCAACTA TTATAGCGAT CAAGATCAAG
    ATCTCTCTTT TTGTGAATCA AAGAATGAAA CTTACCCAAC AACCCAGAAA
    GAGTAACCAT CAAGATGCCA GCTCTGGACA ATATCCTCAG AATTTTCGAA
    AATAATCTCC ACAAAGGTTC TGTAATCAAC TTGCATAACA GATGTGTCGA
    GGTATATTCC TCCACCAGTG GGTTGGTACT GTATGCTTCC ACTTCTGTAA
    ACACCGTCAA TCTTGAAGTA GTCCGCGATT TTCAGAGGAG TGTCTGCGGG
    TTTGAATGAG ACACT

AT1G76150.1

Model type
Protein coding
Short Description
enoyl-CoA hydratase 2
Curator Summary
Encodes a monofunctional enoyl-CoA hydratase 2, involved in the degradation of even cis-unsaturated fatty acids, gene expression is enhanced during the first 2 days of germination, as well as in senescent leaves.
Computational Description
enoyl-CoA hydratase 2 (ECH2); FUNCTIONS IN: oxidoreductase activity, 3R-hydroxyacyl-CoA dehydratase activity; INVOLVED IN: fatty acid beta-oxidation, unsaturated, even number, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MaoC-like dehydratase (InterPro:IPR002539), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); Has 2242 Blast hits to 2242 proteins in 541 species: Archae - 23; Bacteria - 1245; Metazoa - 172; Fungi - 395; Plants - 47; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76160.1

Model type
Protein coding
Short Description
SKU5 similar 5
Computational Description
SKU5 similar 5 (sks5); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5-similar 6 (TAIR:AT1G41830.1); Has 5094 Blast hits to 5026 proteins in 887 species: Archae - 12; Bacteria - 1432; Metazoa - 265; Fungi - 1965; Plants - 1269; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Link
InterPro Scan - TAIR