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53-4439-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22809030 [Map]; Strand: c
      • AT5G56320.1 - [+] show detail - expansin A14
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-4439-1 - 3-prime edge 
    CTTCTGGCAC CATGGGTAAT TTGCTTACTC CTCTCTGACA CTTTATAGTT 
    ATATCATTCT TATTTTCTGA CCAATATAAC TTCAAACTTC AAATTTCTTA 
    GGAATTTTAA AGTTTTTATT AGTGAGTGGT GACAATTAAT ATGCTACTAA 
    TTAATATGCT ACATAAGTTT GTATCTACAC AAGTCTTATT TTTGTGTTGT 
    TGTTGTTTCT GTATGGATCA GGCGGCGCGT GTGGTTACGG AAACTTATAC 
    AGTCAAGGAT ACGGCACTAA CACGGCGGCT CTAAGCACGG CTCTATTCAA 
    CGGCGGCCAA AGCTGTGGTG CTTGTTTTCA GATAAAATGC GTAAACGACC 
    CAAAATGGTG TATCGGTGGA ACAATCACCG TCACCGGAAC AAACTTTTGT 
    CCACCCAACT TTGCTCAAGC CAACAACGCC GGAGGTTGGT GTAATCCTCC 
    TCAACACCAC TTCGATTTAG CTCAGCCCAT CTTCCTCCGT ATTGCTCAAT 
    ACAAAGCCGG CGTCGTCCCT GTCCAATACC GGAGGTACGT TTCCCGATCT 
    CGGTTTAGCT CGGTTTGTAA TTCGTACGTG CGGNTTGATT TATGCTCTGT 
    TTTTTAAAAC AGAGTGGCTT GCCGGAGAAA AGGAGGAATA AGATTCACGA 
    TCAACGGTCA TTCATACTTC AACCTCGTAC TTATAACCAA CGTCGCCNGC 
    GCCNGANATG TTATCTNCGT CT

AT5G56320.1

Model type
Protein coding
Short Description
expansin A14
Curator Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational Description
expansin A14 (EXPA14); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root, stamen; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR