1. Home
  2. Mutant Lines
  3. 53-4440-1

53-4440-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25151097 [Map]; Strand: w
      • AT1G67220.1 - [+] show detail - histone acetyltransferase of the CBP family 2
        Distance: 539; Region: intergenic
      • AT1G67230.1 - [+] show detail - little nuclei1
        Distance: 173; Region: intergenic
    Flanking Genome Sequence: 53-4440-1 - 5-prime edge 
    NNANANNANN NAANNNNAAN NNNNNNNNNN NNNNNNTNAA AAANNNTNAA 
    AAANNTATNA NNAANNANAA AAGCGGTTNT TCGANACCGG ACGGTACGGG 
    ATTCNCCCAT GCGCCTTTCA TCCCTTTTTT AGNNATTTNA AAACTGNGCA 
    TGCCATAATT CTGATCNATC ATTACCGTGT ATTTAATGCA GAAAGNTATA 
    NTTTTGACCC CAAAAAAGTN GTATCCAACC AAACACATAN AAATGGATCA 
    AAGCANNAAA ANGCAAACAC TTTGTGGTNA CAAGGATCAC ACTCTCATAN 
    AANAAATAAA TCATCATCTA AAACATACCA AANGAATGGA GATNNCTNGA 
    AGATCATCTG NAACANNATA GCAACTAAGN NGGTAGAAAG CTANAAANAA 
    AACACTACAT NGTGGNGAAA AAATATCCNA ACNAAATTAA CANAAGCCCT 
    CCTAAGNNGC CTACTAAAGA TCAAGAAGNA AAACACTAAN ATCGTCAACA 
    GGAANAAGGA TNANCNACAT NCTNCTGNNN ANANGANNGG GCTNCGGNAC 
    GTCNAGAAAG NGCCCANAGC CTACCAGCCC CAGGGCCGTN GNAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23708493 [Map]; Strand: c
      • AT5G58680.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4440-1 - 3-prime edge 
    GCTGCAACAA TATCGACACA CTTATCTCCT TCTGTCTCTG TGTTCCCGCT 
    TCAACAATCT CAACCAACAC CGGAACTCCT CCTTCTTCCA CAACCGCCGG 
    CTTCGATTCC GGCGCCGACA TTAACAAATT CATAACAAAC GCNTGATTTA 
    TCAACCATAT CCGATTCAAA ATCAATCATT AACTCCACTA ACGGCTTCAT 
    AATCCCAGAT TCAACAGCTC TGGTTTTGTT CTCGTTCGTC GAACACAACG 
    AGTATAAAGC CGTCGACGCG TCTTTCTTCG CTCTGAATCC GCCATTTTCT 
    AGAAGGTTCA CTAGTAAAGG AATCGCTCCT GATCTCCCAA TCGTGATTTT 
    GTTTTCCTCC ACTTGAGATA ACCGGAGCAG AGCACAAGCA GCGTTCTCTT 
    TCGTCGTCGG TGTTCCTAAT CTCAACGCAT TAACGAGCGG TTTAACCGCA 
    CCGGAAGAAA CAATCATCTC TTTGTTCTCA TCGCAGAGAG ATAGATTCAA 
    CACCGCAGTG ACTCCATACT CTTGAAGCTG AAGATCCGAA GACGAGATTA 
    AAGAAACCAA CGGTTTAATA GCACCGGCTT TAGCGAGTTT GATACGATTC 
    TCTGGTTTGT TCTTTGATAA GAGTCTAATC TCCATAGCAG CTTGCTTCTG 
    TTCCTCGATC GAAGAAGATG ACTCAAGATG CGTTATGAGA TTTCTGATCA 
    CGTCATCG

AT1G67220.1

Model type
Protein coding
Short Description
histone acetyltransferase of the CBP family 2
Computational Description
histone acetyltransferase of the CBP family 2 (HAC2); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: shoot apical meristem, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase, RTT109 (InterPro:IPR013178), Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, ZZ-type (InterPro:IPR000433), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1); Has 1838 Blast hits to 1436 proteins in 226 species: Archae - 0; Bacteria - 234; Metazoa - 975; Fungi - 55; Plants - 202; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67230.1

Model type
Protein coding
Short Description
little nuclei1
Curator Summary
Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.
Computational Description
LITTLE NUCLEI1 (LINC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nucleus organization; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nuclear matrix constituent protein-related (TAIR:AT1G13220.2); Has 314297 Blast hits to 138342 proteins in 3965 species: Archae - 3454; Bacteria - 70538; Metazoa - 123746; Fungi - 25476; Plants - 17143; Viruses - 1173; Other Eukaryotes - 72767 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58680.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G01400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR