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53-4447-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 231004 [Map]; Strand: w
      • AT1G01640.1 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: exon3 (3UTR)
      • AT1G01640.2 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 53-4447-1 - 5-prime edge 
    CCTGCAAATC TAACACACAA CTTGTTCCAA CTAGAATTCT AAACCAAAAC 
    AACAAAATAA TATAAAAGAG GTTTAATTTA TGAAGGGTAC ATTGAAAAAA 
    AGAAAACACC TTGAATTGAT AATCCATAAA ACAAGTCTTT ACTAATATTT 
    TCACTCTTAT TAGAAAGAAA AGAAGAAACC ATCAAATCCC CTTTGGCAAG 
    TGAGATCGAT CCACTTACAC AAGCTGTTTG TTCACCAGAT GCGTGGGCGA 
    GTATTACCAT TTAGAGGAGC TCCATGATCT TTGGCTTTGG CTTTGGTCTC 
    TCTCAGATAA GCCCGAGTGA TCTCCACGCT TAGATCCGGG TTCCTCTGCA 
    CAAACGTCTC ATATTTCATG GGAACAACCA CTTCTTCCAT ATGTTTGACA 
    ATATGATTGA TAGCCGCGTC TTTCAAGATT GTGTCACAAG GTATACTGGC 
    GAGCTCTAAG ATGTCTAGGA CGTTCCTAGA GCTCAGAGAT GCGATGAAAT 
    GGTTACGGCA TACGTCTTGC AGATATGAAA TGTCGTACTT ATCTGCAGCC 
    AGATATAGGG ATCGGTATTG ATTGTATGGA GCTTTTAGGT TACCGCTGTA 
    GAGGAACTCG ACCANCCCNG GCCGTCNACC ACGCGGCCCC NNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 230888 [Map]; Strand: w
      • AT1G01630.1 - [+] show detail - Sec14p-like phosphatidylinositol transfer family protein
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 53-4447-1 - 3-prime edge 
    TTTGCAGGGA AGAGCAACAG CAAGCTAGAC TGAAATTGTA TAGTTGCCGA 
    AGTATTATGG CTAGATCACA GTAGATAGAT AAATATGAAA AATTACATGA 
    AATTTAAAGG TGTTTTCAAT ATTATATCTT TTAGCNTTCT TTGACAGTAA 
    ATATATAATT GTTGGCATTT GGCGACACTC AATATGTTTT TCATTTTATT 
    CAAATAAAAA ATAATACTAG TAAGTAATAA TTTGGAAATA GAGGTGGGCC 
    GTAGTAAGAC CTATAATCAG GTCTCCTGAA TAGGAACAAG TGGCAATTTG 
    CCTCCGTAGA TGTCGGGAAG TTGGCTTTCG TCTATGTCTT CAAGCAGCGT 
    TGGAGTGAGT TTCTTGTTCT CCACGAAAAC AATCTGCCCC CCCAAAAAAA 
    CACGAAATTA ACAATCAAAT TTTCCAACAC AGTCTTAAAA CATACTAATA 
    AAGTGATTGT GAAGCAGAGC AAATCAATGT ACCTTTTTCT TGGTGTTGGC 
    GTCGATAAAA GGATAAATGA CCTTCCATGC GGTCATGAAA ATGTAGGGGG 
    CATGAACTAT ATAGAGTTTC CCTAATCTCT CTGGGTAACA ATCCTGTAAA 
    ACAAGGTTTT CTTAATGTGG GGGTTACTCA CTGTCAGGAC TCACGACCAT 
    GAACAATATT ACTAACGCAA TATTTTGCTA AAAATAGGAT TACNATCATG 
    AAAGTTCCTT TTCAAA

AT1G01630.1

Model type
Protein coding
Short Description
Sec14p-like phosphatidylinositol transfer family protein
Computational Description
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G14820.3); Has 3015 Blast hits to 3010 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 1124; Fungi - 666; Plants - 866; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01640.1

Model type
Protein coding
Short Description
BTB/POZ domain-containing protein
Curator Summary
Putative role in flower development. Comparison of SALK_011721C to Columbia wild type resulted in a trend toward earlier flowering in the mutant (P=0.1) (Stapleton and Woodruff 2009, personal communication).
Computational Description
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G56230.1); Has 4339 Blast hits to 4265 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 3351; Fungi - 8; Plants - 720; Viruses - 35; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01640.2

Model type
Protein coding
Short Description
BTB/POZ domain-containing protein
Curator Summary
Putative role in flower development. Comparison of SALK_011721C to Columbia wild type resulted in a trend toward earlier flowering in the mutant (P=0.1) (Stapleton and Woodruff 2009, personal communication).
Computational Description
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G56230.1); Has 4339 Blast hits to 4265 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 3351; Fungi - 8; Plants - 720; Viruses - 35; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR