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53-4462-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22566542 [Map]; Strand: w
      • AT5G55750.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: -521; Region: promoter
      • AT5G55760.1 - [+] show detail - sirtuin 1
        Distance: -680; Region: promoter
    Flanking Genome Sequence: 53-4462-1 - 5-prime edge 
    GTCATATGGT TTAGTATTTT ACAAATTACA ACCCACTTTA TCAAATGGTT 
    TCAATATTCA ATGTGTTGAC ATTTACCTAT ATATTTTAAA TAATAACAAG 
    ACGATAAATT TACNTTATTT AATAACCTCA TTGTATTGGT TTAACCAATT 
    AGATGAATGT TGTTTACAAT GATTCAAGGA TACCGAAACC GAGTTCAAGT 
    TTTGTTATAA GATGATCTAC AACCGTGAGC TTGACACAAA TATTATCAGT 
    CTAATTCTGG GACTAAAGAG ATTATGGATC ACATATTCAT AATTTCATGA 
    TTACATAAAA AAAGTAAAAA TAAATAAATG ATATATAGAT AAAAATTGGT 
    GAAATGTATT AAAAGTTGCA ATGATATCAC CCACTTAATT TAGCTATGAT 
    ATTTTAGGTT AATGTAATTA ATGTTTTTCT TATATCAAAT TTTTGTTTAG 
    CCAAACTAAA CAAATTTGAG AAATATAATA ACATGGCATA AAATAAGTTT 
    TATATGAATC CAATTAATAC CCTAATTTGG ATTTTCATTT AAATATCACA 
    AACTTTAGGT TTATCAGGGA AACATAATAA AGAAATGTTA TATAAAAATT 
    TAGCAACACT TTTAAAATCT AAAATCTCTG ATATTCTGAG AAATGTCAAA 
    AAAAATATTC CAGATTGCAT ATATAATAAA ATCATAATAA AAAGAATTAA 
    A

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22566426 [Map]; Strand: w
      • AT5G55750.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: -405; Region: promoter
      • AT5G55760.1 - [+] show detail - sirtuin 1
        Distance: -796; Region: promoter
    Flanking Genome Sequence: 53-4462-1 - 3-prime edge 
    CATATGACAG GGTTTACTAT GGATTTAAAT TGATTCTATG TGACGTTCTG 
    GTGCATGCTC AACCATGAGC TTATATTAGA TTAAAATCTT GTTCTATCGA 
    ACCGGTTTGA AACTCATCAC CTCAAAGCCA TTTTGAATT

AT5G55750.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55760.1

Model type
Protein coding
Short Description
sirtuin 1
Curator Summary
Encodes SRT1, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).
Computational Description
sirtuin 1 (SRT1); FUNCTIONS IN: NAD binding, DNA binding, zinc ion binding, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: sirtuin 2 (TAIR:AT5G09230.7); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR