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53-4465-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23890345 [Map]; Strand: c
      • AT5G59200.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4465-1 - 5-prime edge 
    CTTGGCAGCG ATCACCGGAG GGCCTTCAAC TTTCCGGCGT GATCCCGATT 
    CAAACACTCT CAGGCTTTCA CGCAGGAAAA CATTAATCTC TGTATTACGA 
    AGCTGCAAGA ACATTGCCCA TGTTCCATCG ATTCACGCCA AGATCATTAG 
    GACCNTTCAT GACCAANANG CTTTCGGTGG TTTTCNAACN TATNCNGGGT 
    TGCTCCACTN TTGATTCCGG GGANTACNCC TAAAANGGGT TAGTTNCGNT 
    TTTANCCCTA ANGGTTTNTT TACCCCGGTT TAAANAAGGG TTTNGGGCAT 
    TGGGGCCNTT CGGGGANGGG GTTNCCNGTT TANANGGNNA AANNAAANNG 
    GGGTTGGCGG GAAAACCCGG GAACCCCCNT TTTNAAACCT TTNAAAAGGG 
    NANAAAGGGG GGNNNNTTTT NAAANNAAAN NNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23890461 [Map]; Strand: c
      • AT5G59200.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -34; Region: promoter
    Flanking Genome Sequence: 53-4465-1 - 3-prime edge 
    CTGCCAAGGA AGAAATCATT TCGCGCTCAA TTGAAGATTC TAAACCGTTA 
    CAATTTTCGG TTATAATTAG CCCAATCCAA GTAAAATGGG CCTGTAACAA 
    AAGGCCCAGT TCGTTGATGA AGATAAAAAA AAAACCCANG GAANCCANTT 
    TGANCNTTGN CNAAATTTAA AAATTCGGTT TAGTNTNNCT TTTNTAACCA 
    AACTCCAAAC CTTCCAAAAT NAAACTTGNG GAAAACNAAC CGAAGNTNCC 
    ANCCCGGGCC GTNNACCACC GTGGCCCCTT NTAA

AT5G59200.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Encodes a chloroplast RNA editing factor.
Computational Description
ORGANELLE TRANSCRIPT PROCESSING 80 (OTP80); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G37380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR