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53-4467-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22024939 [Map]; Strand: c
      • AT5G54240.1 - [+] show detail - Protein of unknown function (DUF1223)
        Distance: -478; Region: promoter
    Flanking Genome Sequence: 53-4467-1 - 5-prime edge 
    CCTAAAACCC TCTGTTATTA ATGGAAGAAT TGGTTTTTCA TTTTTGGTCT 
    CACCACGTTT TTTGGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18271830 [Map]; Strand: w
      • AT1G49360.1 - [+] show detail - F-box family protein
        Distance: -2382; Region: intergenic
      • AT1G49370.1 - [+] show detail - pseudogene, similar to OSJNBa0072F16.8, blastp match of 42% identity and 6.6e...
        Distance: 3220; Region: intergenic
    Flanking Genome Sequence: 53-4467-1 - 3-prime edge 
    TTNNNNNNNN CCTTGCAGNC GGNCNNAGTT TGTTNCCGAC CGTTTCCGAC 
    CGNTNTCATC CCCNNCCNGG GAGANCANNG CTGNGTNAAA ATCNCAAACN 
    TATNACAACA ACNANCANAT CCCNAATATA TANCTACCTN ACAGTAGNNA 
    GCTTNCTCTN ANCAAGGCCT TCAACACGAT TGATCCCAAN ACNCTCANCT 
    ATGAGATGGC CAGATGGGNG TGGNTGCNGN TANGCAGTNC TTGTAGCNTC 
    TACCAACNNG AATTCACAAT CANATNTGGA TCAAGAAN

AT1G49360.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G57790.1); Has 351 Blast hits to 349 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G49370.1

Model type
Pseudogene
Computational Description
pseudogene, similar to OSJNBa0072F16.8, blastp match of 42% identity and 6.6e-73 P-value to GP|21739229|emb|CAD40984.1||AL606460 OSJNBa0072F16.8 {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR

AT5G54240.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1223)
Computational Description
Protein of unknown function (DUF1223); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1223 (InterPro:IPR010634); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1223) (TAIR:AT4G27350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR