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53-4472-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18572822 [Map]; Strand: w
      • AT4G40060.1 - [+] show detail - homeobox protein 16
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-4472-1 - 5-prime edge 
    ATCTGAGCTG CTTAGTCTCT TCATGATGAC ACTTTAAAAT AGTTCTACTC 
    CAGCTTTTTC TTTATTATCA GAGAAATTCT TATGAAGTTT TGAAATTACA 
    ACAATGTTGT AAACATAATT GAGCNTTCTT CACTTGAACA ACAACATGAA 
    CAAAACGAGG AGACTTTAGA GGCTCAAATT AGAAAAAACA GAGAGAGGGA 
    TATGGATTGA GAAAGTCCAA AAAAGAGAGA GAGAGAGAGA GAGAGAGAGA 
    GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGACNCT CTNCGCGCGC 
    GCNCNCGCGC NCNCNCNCTN TATANNGTGT GTGNGAGAGN GNGAGANNNN 
    ANACNCCCCN CTTNTNTATA NAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18572706 [Map]; Strand: w
      • AT4G40060.1 - [+] show detail - homeobox protein 16
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-4472-1 - 3-prime edge 
    GCTCAGATTC AATGTGTGGT CTAATCTCCA CTTCTACAGG TTCTTATTAC 
    CATCTTTGTT CTTTCTACTT TTTGCTAATG TCAGACAAAA CCCATGTGAT 
    CCTTTCTTCA CTTTCCACTG TTTCTTTTAT TGACAAGATT CATTTGGTTA 
    CACAACAGAT GAACAGAGTC CAAGAGGGTA CNGGAAGTAA TTACCAATCT 
    ATGCTTGAAG GTTACGATGA AGATGCTACA CTAATCGAGG AATATTCCGG 
    CAACCACCAC CACATGGGTC TATCGGAGAA GAAGAGAAGA TTAAAAGTTG 
    ACCAAGTCAA AGCTCTTGAG AAGAATTTCG AACTTGAGAA TAAACTCGAA 
    CCTGAGAGGA AAACTAAATT AGCACAAGAG CTTGGACTTC AACCTCGTCA 
    AGTAGCTGTT TGGTTTCAGA ACCGTCGTGC ACGGTGGAAA ACAAAACAGC 
    TTGAAAAAGA TTACGGTGTT CTTAAGGGTC AATACGATTC TCTCCGCCAC 
    AATTTCGATT CTCTCCGCCG TGACAATGAT TCCCTTCTCC AAGAGGTACA 
    ATATTAGAGA CTTTAAACCA TAAAAATTGA AACTTCAGAG ACGAAAATGC 
    AAAAAGGTTT GATTTTTAAA GTTTTTGGTT GCAGATTAGT AAAATCAAAG 
    CTAAGGTAAA CGGTGAAGAA GATAACAACA ACAACAAAGC TATTCGGAGG 
    G

AT4G40060.1

Model type
Protein coding
Short Description
homeobox protein 16
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
homeobox protein 16 (HB16); FUNCTIONS IN: sequence-specific DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 6 (TAIR:AT2G22430.1); Has 9713 Blast hits to 9689 proteins in 534 species: Archae - 2; Bacteria - 4; Metazoa - 7673; Fungi - 210; Plants - 1646; Viruses - 5; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR