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53-4479-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23517686 [Map]; Strand: w
      • AT5G58120.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4479-1 - 5-prime edge 
    GGGATTTCGA TGTTTGATGA TCAAAGTATC GAAAGAAGCC AAACCATCGT 
    CCCTGCTCTC ACAGGAGCAA TCAAGGAATC GAGGATCTCG ATCGTGGTGC 
    TCTCGAAGAA CTACGCATCA TCGAGGTGGT GTTTGGATGA GCTGCTAGAG 
    ATTTTGAAGT GCAGGGAAGA TATAGGACAA ATAGTGATGA CCGTCTTTTA 
    CGGAGTAGAT CCATCTGATG TCCGTAAACA GACCGGAGAA TTTGGGATCG 
    CTTTTAATAA AACTTGTGAA GGGAAGACAA ATGAGGAGAC ACAAAAATGG 
    AGCAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23517570 [Map]; Strand: w
      • AT5G58120.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4479-1 - 3-prime edge 
    GAAATCCCGT TGTAGCTAAA CTGTTTACGT AAATGGCTGA GGAATGTTTT 
    ACGGACGTCA GGTCCATGGA AGTTCGTGAA GACGCGGTAT CTCCAGGTGC 
    GAGACCGAGA AGAAGAAGAC GAAGAAGCCA TGGGGAAGAA TCTTGAGTGG 
    TTTAAAAGCA AAGTTCACAA ATATGTATTT GGATAAACAT TTTTTTTGGA 
    TGAGAAAATG GCAAGTCGTA CTCAGTGAGA GTTATACACA GAGGAAGAAA 
    TGGAAAGTTT CGTGGCTTTT TCATTCACTC ATCTTTGAAA AGTGGACGAA 
    ATTTCAAACC GAGTGAATTG ATTATCACCC ACAAAAATAG AGAAGAAAAA 
    AGAAGTCAGA GGTTTATTAC ACTACTGTTT GGTTTTTGGA AAGTTGTACA 
    AACAAGCGGT CTTCTTGGGT TATATTGCAA ACGCGTAAAG AAAGGAGGAG 
    GTTCCTTTAA CGTTTGAAAT GATTGTTTTT AGAAAGTTGA AAAAGATTAA 
    TGTTTTTCCT TGCAACAAAA AAGTAAACTT AAGGTTTATA TATTTTTTGG 
    GGAAATTGAG GAGAAAAGAA ATTTCTTTCT CATTGGTCCC ATCTATGCCT 
    TTTTATTTAA GTTTGGTGAA CTTTATTTTG TNTTTATCAA TCGAATTTCA 
    TTTCGTATCT TTAACGGGTG GGGTTTTNNG ANNGGGNCCC CAANAAAAAA 
    AAAATGGGGG TTNNNNNNNA AAAANNTTTT TTTTNNNT

AT5G58120.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G63750.3); Has 15550 Blast hits to 12870 proteins in 462 species: Archae - 6; Bacteria - 602; Metazoa - 848; Fungi - 29; Plants - 13811; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).
Link
InterPro Scan - TAIR