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53-4481-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24271998 [Map]; Strand: w
      • AT5G60320.1 - [+] show detail - Concanavalin A-like lectin protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4481-1 - 5-prime edge 
    GCGGTAAAAA GAGTGTGCCA CGATGCAAAG CAAGGCATGA AACAGTTTGT 
    GGCTGAAGTA GTGACTATGG GAAGTTTAAA GCACCGGAAT TTGGTTCCTC 
    TTCTCGGGTA CNTGCAGGAG GAAAGGAGAG CTTCTTCTGG TTTCTGAGTA 
    TATGTCTAAT GGCAGTCTTG ATCAATACTT GTTTCACAGA GAAAAACCGG 
    CTCTTTCATG GTCTCAAAGG CTTGTCATTT TGAAAGATAT CGCTTCTGCT 
    CTCAGTTACT TACACACAGG AGCTAACCAA GTTGTGTTAC ACAGAGATAT 
    AAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24041168 [Map]; Strand: c
      • AT5G59662.1 - [+] show detail - other RNA
        Distance: -757; Region: promoter
      • AT5G59670.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -326; Region: promoter
    Flanking Genome Sequence: 53-4481-1 - 3-prime edge 
    ATAGCCNGCC ANTCGNTCTC TTGANTTTGG NNNGCGTGTT NTACCGNCNA 
    GCGAATATNC AAAGAAAAAC ACAAAAACAA TAAACAAAAA GGGACAACTC 
    TTTGNTNGGA CATGATCTTA TATAATTGAT ACCAATGTAT TGCGTGAACN 
    GTGCTTCATT GGTTTACATC CTTAGTTTCC CAGAAAAAAA TCATGACGTT 
    GATGTTGGGA CATTGNNGTN CTNTTAACCC TCATCTTCTT CCGTTGGTGA 
    ANCTGCACTA GAAAACACAT TTACCCATTT CCACCATTGA CCTGACTAAN 
    TCTTTCTTTT AGTGTGCAAT TTGGGTTTGC TAATTTATTT ACTGTTTATA 
    TTCAACAGCA TAGCCAATGG TTTTTTGATT NTTCCTTGNG AGTTGANAGA 
    ATTGNGAGGG TTCTGTTGGG CTTTTGTTGG TACTGTTAAC TTTGGCCATC 
    ATTCATATTG TTCAAGCTCA AGACCAACTA GGTATCAGAC ATATGTCTTC 
    TATGTACATC ATTCATATTG TTCAAGCT

AT5G59662.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G59660
Link
InterPro Scan - TAIR

AT5G59670.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60320.1

Model type
Protein coding
Short Description
Concanavalin A-like lectin protein kinase family protein
Computational Description
Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT3G45330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR