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53-4482-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17323176 [Map]; Strand: c
      • AT1G47260.1 - [+] show detail - gamma carbonic anhydrase 2
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-4482-1 - 5-prime edge 
    GTATCGAGGA ACATCGTAAG CTTCCAGATC CTTCCACTTA ATACTCTCTA 
    TTGAAACCCT AGATCCAATT CGTTATCTCT AATTTGTGTC TTCACCTTTG 
    ATTGGAGAAA TTTGTGGCCT TAGATTGAAA AAATTTGATT CGAGAAATTT 
    GTGTTTGTTT TTCAGTGTCG AGGCATCGGA CGTTGATGAA TGTGTTTGAT 
    AAATCACCAT TGGTGGATAA AGATGTGTNT GTGGCTCCGA GTGCTTCTGT 
    TATTGGNGAT GTTCAGATCG GAAAAGGCTC GTCGATTTGG CATGGCNGGG 
    TCCTTCGAGG GGAGGCTTTA NNACTTCTAN AAAGANNNAA CGGCCCNCNG 
    GNNGATNTTA AGGGNCCCCT CCTGNNNNTT TATANNCCCC AANGNAGNCN 
    NAGNNNAGTA NGGGNGAAAN GAGGGGGGGN NNNCCCCNCN AANANAGGGG 
    GNCACCCNCC CNCCNCNTNN GGGGGGANNN NNNCNNGNAG ANNNGNNNGG 
    NGNNNNCCCC CTTTTTNNTT TNTNTNNNAN GAGNTNNGNN NAAAANAAAN 
    NGNTTGGNAA GGCNCNNTTT GNTNNGGGGG GGGGAAAANN NANNGGGGNG 
    GGGAAANANA AAAAANNNAA AAAAAAANNA NNTTTTNTCC GNNNANNCNA 
    NAAANNCNNC NNGGNNGGAA AGGNNNNCAC ANAANANANN GGGGGNNGGG 
    ANNAAAAAGN CCGGNGNCCC NCCNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17323292 [Map]; Strand: c
      • AT1G47260.1 - [+] show detail - gamma carbonic anhydrase 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4482-1 - 3-prime edge 
    CTCGATACGG TGACTTCCTT GAAGAAGAGA ACCAACGCGA TCAAGAGCTT 
    GACCAGTTCC ACGAATCCAG TTACCCACAG TGTAAATTGC TCGTCCTAGG 
    GTTCCCATTT TTTTGTGATT CTCCGATTAC CCAAAGTGTG AAAATGAGAA 
    GGCTTTGTTG TTTTTGGTGT CGCTCCACCA GATAGAGAGA GGTTTATGGA 
    GGCGTATTGA TGGGAGGATT TTTTTTTTTA ACTCNAGNGA GTTCGTTTNT 
    TTTGTTGACC TNTAAATTTT TAAAGTNTGG AGNGGTAACT GGTAANCTAA 
    NCCAANCCNA ANTTTNTNGG TNGGACTTAC ANAAATTGNN AATNCAAAAT 
    CCGGATANAT TCNTTTTGCA NTGTANGGAN ATGGAACAAA GCTN

AT1G47260.1

Model type
Protein coding
Short Description
gamma carbonic anhydrase 2
Curator Summary
Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.
Computational Description
gamma carbonic anhydrase 2 (GAMMA CA2); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: response to salt stress, regulation of oxygen and reactive oxygen species metabolic process, anther dehiscence, photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 1 (TAIR:AT1G19580.1); Has 12062 Blast hits to 12006 proteins in 2273 species: Archae - 302; Bacteria - 8576; Metazoa - 53; Fungi - 108; Plants - 233; Viruses - 0; Other Eukaryotes - 2790 (source: NCBI BLink).
Link
InterPro Scan - TAIR