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53-4494-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2921241 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 2045; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -32768; Region: intergenic
    2. Chromosome: 4; Position: 2922845 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 3649; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -32768; Region: intergenic
    3. Chromosome: 4; Position: 2924268 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 5072; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -32768; Region: intergenic
    4. Chromosome: 4; Position: 2926758 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 7562; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -32336; Region: intergenic
    5. Chromosome: 4; Position: 2928001 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 8805; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -31093; Region: intergenic
    6. Chromosome: 4; Position: 2929603 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 10407; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -29491; Region: intergenic
    7. Chromosome: 4; Position: 2932807 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 13611; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -26287; Region: intergenic
    8. Chromosome: 4; Position: 2934409 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 15213; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -24685; Region: intergenic
    9. Chromosome: 4; Position: 2936011 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 16815; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -23083; Region: intergenic
    10. Chromosome: 4; Position: 2938500 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 19304; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -20594; Region: intergenic
    11. Chromosome: 4; Position: 2940234 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 21038; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -18860; Region: intergenic
    12. Chromosome: 4; Position: 2941657 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 22461; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -17437; Region: intergenic
    13. Chromosome: 4; Position: 2943079 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 23883; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -16015; Region: intergenic
    14. Chromosome: 4; Position: 2944146 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 24950; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -14948; Region: intergenic
    15. Chromosome: 4; Position: 2946102 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 26906; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -12992; Region: intergenic
    16. Chromosome: 4; Position: 2947526 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 28330; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -11568; Region: intergenic
    17. Chromosome: 4; Position: 2955705 [Map]; Strand: w
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 32767; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -3389; Region: intergenic
    18. Chromosome: 4; Position: 2962281 [Map]; Strand: w
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon12 (CDS)
      • AT4G05612.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: 53-4494-1 - 5-prime edge 
    CTCTGGAAGA CCAAATATGT CCCAGGTTGC TAATGAACTA CAAGAGTGTC 
    TCTTAACTGA GAACTCAAGG AAAGGAGGGA GACATGACGT GGACTCCAAG 
    AGTTCTCTTG AGCAGAGCAC AAGCTAGCAT CCCGGGCCGN NGACCACNCG 
    NACCCCTATN TTATGTGTTT GATTGAGTAT AAGAACTAGA ACCGCAACAT 
    CTTCCCAAAA GCTAAAGTTG TGTTTCCCTT CTAGAAGATA CAAAGCCAAA 
    AACTCATACG GACTTTGGCT ACACCATCAA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11024255 [Map]; Strand: c
      • AT4G20440.3 - [+] show detail - small nuclear ribonucleoprotein associated protein B
        Distance: -500; Region: promoter
      • AT4G20440.1 - [+] show detail - small nuclear ribonucleoprotein associated protein B
        Distance: -503; Region: promoter
      • AT4G20440.4 - [+] show detail - small nuclear ribonucleoprotein associated protein B
        Distance: -519; Region: promoter
      • AT4G20440.2 - [+] show detail - small nuclear ribonucleoprotein associated protein B
        Distance: -507; Region: promoter
      • AT4G20450.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon12 (CDS)
    Flanking Genome Sequence: 53-4494-1 - 3-prime edge 
    TTCCAGAGGA AGTTGGATTA ACGCATGACA TTGCTAGCTC AAGGGCCTTC 
    CACAATGAAC TAGAGTCATA ATCGCCATTC ATACTTGGAT C

AT4G05610.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein, putative retrotransposon-like orf - Arabidopsis thaliana,PID:g4309868
Link
InterPro Scan - TAIR

AT4G05612.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 183 Blast hits to 96 proteins in 39 species: Archae - 0; Bacteria - 19; Metazoa - 58; Fungi - 4; Plants - 39; Viruses - 9; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G05612.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 137 Blast hits to 64 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 46; Fungi - 4; Plants - 30; Viruses - 8; Other Eukaryotes - 36 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20440.1

Model type
Protein coding
Short Description
small nuclear ribonucleoprotein associated protein B
Computational Description
small nuclear ribonucleoprotein associated protein B (smB); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT5G44500.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20440.2

Model type
Protein coding
Short Description
small nuclear ribonucleoprotein associated protein B
Computational Description
small nuclear ribonucleoprotein associated protein B (smB); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT5G44500.2); Has 66876 Blast hits to 32698 proteins in 1298 species: Archae - 65; Bacteria - 8752; Metazoa - 34794; Fungi - 7169; Plants - 8402; Viruses - 1350; Other Eukaryotes - 6344 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20440.3

Model type
Protein coding
Short Description
small nuclear ribonucleoprotein associated protein B
Computational Description
small nuclear ribonucleoprotein associated protein B (smB); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT5G44500.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20440.4

Model type
Protein coding
Short Description
small nuclear ribonucleoprotein associated protein B
Computational Description
small nuclear ribonucleoprotein associated protein B; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleoplasm, Cajal body, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT5G44500.2); Has 66867 Blast hits to 32689 proteins in 1295 species: Archae - 65; Bacteria - 8747; Metazoa - 34794; Fungi - 7165; Plants - 8402; Viruses - 1350; Other Eukaryotes - 6344 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20450.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G29000.1); Has 157406 Blast hits to 121766 proteins in 4522 species: Archae - 95; Bacteria - 13354; Metazoa - 44140; Fungi - 9932; Plants - 71049; Viruses - 392; Other Eukaryotes - 18444 (source: NCBI BLink).
Link
InterPro Scan - TAIR