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53-4496-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18440713 [Map]; Strand: w
      • AT4G39753.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4496-1 - 5-prime edge 
    GTAATGCCCC CGACATGACT GTGGCTAGAG CTAATCCTGT TGCCTACGTC 
    TTCGATAGGA AAATATATGT TATGGGAGGT TGTGCGGAAA CCGAATCCGC 
    AAATTGGGGT GAGGTTTTTG ATCCAAAGAC TCAAACTTGG GAACCTTTAC 
    CTGTCCCTTC CCCTGAGCTC CGCTTCTCTT CAATGATTAG AAAAATAGAG 
    ATGATCCAAG GAAAGTTTTA CGTGAGGAGC AATGACAGCA AGGACTCTGT 
    TTATGATCCG ATAAGAGAGA AATGGAACGT TGCAGCGAAA CCGCAGTTGA 
    ATGATAGTAG GTGTTCGGTA GGTAATGTTT GGTACTCTTG TCGTCCCAAC 
    AGTTTCTTGT GGTTTGACAA TGAAATTAAA AATTGGAGAC TGATCAAGGG 
    TTTGTCTTCG TTGAATCATA GTTGTCGTAG TGGTTTGATT GAAACAGTTT 
    GCTACGATGG GAATCTCTTA CTATTGTGGG ACAAGCCTAC CAAGCCTCGC 
    CGTCGTGTTT GTGAAGACAA GTATATTTGC TGTGCGTTGA TTTCGTTTAA 
    TAAGCGCAAA AATGGTCAAG TTTGGGGTAA GGTTGAGTGG TCTAATGTTG 
    TGCTTACGGT TCCCAGTTCA TACCGTTTCT TGCGTTCTAC AGTGATACGG 
    ACTTGATCAA CATGTCTTTA CTTGTTGAGG ATGGCTTTTA TATGTAATTC 
    TTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18440613 [Map]; Strand: w
      • AT4G39753.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4496-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACGCCATA TGACACACTC CTTGTTACGA 
    ACAAACATGA CCCGAGAGGG AGGATAACAT TGTTTGAATG CATAGACATC 
    TGAATCAATA CCTACTACGA GCAATGGTGT TTGAGAAGCA TAGGAAGAAG 
    GTACTTGTAC CAAGGTAGAC TTCTTCTTCT TCTTCTTCTC CTCCTCCTTG 
    TCATCGAATC CTTGGGGTTT GATCCAGAGT GTGTACCACG AGGGAAGAGG 
    ACGATCGGGA AGCT

AT4G39753.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39756.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR