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53-4499-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23134029 [Map]; Strand: w
      • AT5G57123.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -6375; Region: intergenic
      • AT5G57126.1 - [+] show detail - transposable element gene
        Distance: 1496; Region: intergenic
    Flanking Genome Sequence: 53-4499-1 - 5-prime edge 
    TATACATGAG ATGATGCTGC GCCTACAAAA CCATTAATTG GAGGATTATT 
    TTCTAGATCT TAGACACGTA ATACTTATAG ATGTTCAATT TCACTGTAAG 
    AAACACTATT GTAGCATAGA GCNTTTGTAT TTTAAATTTT CATATTCTTC 
    TTATGCATGT TTTTGGTAAC GAAGCATTGG AAAATAAAAT CTCAAAAGCT 
    CTGCATCCTA TTTACGAAAG GGAGACTATG ATTCTTTTTC CTTAATTCCT 
    TTGTTGTGTC TTACCCATTT CTTGAAAACG ATGTGCTTTA TTTTTTGAAA 
    TTTACATAAC AAAACTACCT TACAAGTAAG ATACAGTTTC ATTTGAAGCT 
    ATTCTTGCTA GTAAATTAAA TTTCTTCTCA TTTTCATTGA TGGTTCAACT 
    CTCACATTTT CGCCAAAGAT TATACAGAAA AATCATGATA TTATATATCC 
    AGACCCAAAT CTAGGCAACA TATTTTTTGC GTATGTGTTT CTTTGTTATA 
    ATAATTACGA TATCATATCA TGAAATCATA ATCACAAACA TAAAACGTTT 
    AAGTTTTGAC CAATGCGCGT ACTTTTAACT TTACCATAAA AAAATTGCAT 
    AATTCACATT ACATATGCGC GTACTTTTAA GTGTACCATA AAAAAATGCG 
    TACTTTTACA TTAATCTTGA TTTCATCTAA AGAAACCAGA CTAAAACAAC 
    GATTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23133913 [Map]; Strand: w
      • AT5G57123.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -6259; Region: intergenic
      • AT5G57126.1 - [+] show detail - transposable element gene
        Distance: 1612; Region: intergenic
    Flanking Genome Sequence: 53-4499-1 - 3-prime edge 
    CATGTATACA TGTACTGAGG GAGTCGATGA TGATGATGAT TTCATTTGTT 
    GAACATGCAT TTTTGCGTGC AATCAAACTG CGCAATTCTT CATTTCTCCA 
    AACCCTCTCT TTGATCAAGA GTTTCTTTCT TTGAAACCTT TCAACNTTTT 
    TTTCCACTTT TTTTTTCTTT CTTTGAAACC TTCCACTTGA TCGGGAGTGA 
    TNGGTTCCAT AATTGATTAT CTTCATCCCA TGCATGGTCA TATATATGTT 
    TCAACGCANA GAAGTGTTAG TCTAACACTT TCTATATGTA CCTATAAATG 
    ATGGATCAAG GCATCATAAT ATGTATTACA AATGTCAATC GATATTAACC 
    AATAGCAAAC AAATTTGTNC AANAATATAA AANAATATCT TGTCTGAAAT 
    TGTCANATTC TATGTAAGCT TTGAGAATCA ANAANAAGCT ACCACCCNG

AT5G57123.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57126.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 6.2e-282 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR