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53-4516-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23908370 [Map]; Strand: c
      • AT1G64385.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 6089; Region: intergenic
      • AT1G64390.1 - [+] show detail - glycosyl hydrolase 9C2
        Distance: -2749; Region: intergenic
    Flanking Genome Sequence: 53-4516-1 - 5-prime edge 
    CTGACTGTAG TCTCTATATT TGACCCAAAA AAAATAGTGT ATAGTTCCCA 
    TTGGAATGTC ATCAGATGAC AACAAATATT GTTTTATCTG TTTGCTTTAT 
    TTTATCATTG TTAAGTTCTA TTAAAGCTGG TATTTAAAAA AAAAAAAAAA 
    NGGGNNANNG NAACCNCTTT TNNGGGGCCC AAAAGNCAAT TTTNCCCTNN 
    NCCTTTNCCN TNAAATTTTN AAAAAATTNN ANGGGNNCTN NNGCCTTTTT 
    NNNCGNNTNT NNNCGGGTTA AAAGTTAANA AAAAAATNGT TGGGTNAAAN 
    NTTNNANCCC NGGGGCCCNA AANTTTNNNC NNGNNAAATN GTTTNNCCCC 
    CCCAANCGGN NTTNNNTNTN GGGNTNNTTT CCCNNGGGCC NTNTAAAAAA 
    GTATTTANNG NAAAACCAAN CACCNTTNAA ANAANAAAAN TTGNCNNAAG 
    TTNCANGGNA NGGGAAATNA NTTGNCCCNC ANCNNTTTTG GGGGGCNTGG 
    AANAAATTNG NNCCGNCCAA NNACNANTTN NGNGTNGNTC CAGGGGAAAA 
    AAAANNCNGG AGGGGNTTTT CCNNCNNTTT AAAANNGGGN AAAACAANTT 
    TNTTACCCCC TTGTCCNTGG NTTTGCCCAN GAAANNCCNG NGGGCNNNCC 
    TNCCNNGGCN NATTTNAAGG NNGGNTTTTC AAGTGGGAAA ANTNCCTTNN 
    NCTTANT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23908479 [Map]; Strand: c
      • AT1G64385.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 6198; Region: intergenic
      • AT1G64390.1 - [+] show detail - glycosyl hydrolase 9C2
        Distance: -2640; Region: intergenic
    Flanking Genome Sequence: 53-4516-1 - 3-prime edge 
    ANAGTCAGAG TAAAAAACCA GACAACGGCT TTTCTTTTTG GGCTTTTTGA 
    CTGTTANTGG TTGAAGGATG TGTCACATGA CCCCGACTAA CAATCTTAAA 
    CCACACGTAT ACATGGCACT CCATCGAGAG ATCGAGTGGT CCTTTTTTTT 
    TTNNTTTTTT TTTTTTTNCC CCCNTCCNCT NAAAAAANAN NNCNTTTTNC 
    CNNNNNTANG NTTTTTTANT GGNNGGGNAN NTCCAANAAN NGGGNCCNNN 
    NACCAAAAAC NAANCCCNNG NANGGAAAGG GGNCCGGGGC CGNNAANGTG 
    ANCNGGNNNN TNTNNNAAAA AANCGGGNNN TTNTCCNTTT TTNANCNGTG 
    CAAANNTAAN TTTTANTNTN ANACAANTTT NAANNAACCT TTTCCTTTAN 
    AANNNCNCTT TTTTTTTTTT NAANAAANAN AAAACTTNNN NATTTNTNGG 
    GCNNNNANCN CCCANAAAGA ANNNCGCGNT TNTTTTNTGG GCCNGAAAAA 
    AANNNNNNNC NNGGNNAATT TTTTTTTTNT NANNAAAATC NNANAAATTT 
    TNGNAAANNN GTGGNAANAT TTNTNNNAAA NAAGAANNNA AGGGGNTANA 
    TCCNNNCAAA CAAAAATANN TTANNNTNNG GANGCCNCNT TGTNTGGGNN 
    NNGNAAANAA NCACACTNNT NNTNCAGNNG GNNGTGNNCC NTTTATCACC 
    CNCCNCCACA NTCGNCNCTN TNNTTCNAGN NCNTTCTTNG TCGNNNNANG 
    NTGANTNNCN GNCCGGNNGN ANATAANTGT TTANATCTT

AT1G64385.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 66 Blast hits to 66 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G64390.1

Model type
Protein coding
Short Description
glycosyl hydrolase 9C2
Computational Description
glycosyl hydrolase 9C2 (GH9C2); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C3 (TAIR:AT4G11050.1); Has 1850 Blast hits to 1830 proteins in 260 species: Archae - 2; Bacteria - 630; Metazoa - 187; Fungi - 17; Plants - 921; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR