1. Home
  2. Mutant Lines
  3. 53-4532-1

53-4532-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 227365 [Map]; Strand: w
      • AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -170; Region: promoter
      • AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: -329; Region: promoter
      • AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: -329; Region: promoter
    Flanking Genome Sequence: 53-4532-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TGCTCGAAAG ATTCCATTAG CATCCTCGAG
    ACTAGCGGAG AAAGACGTGC AATGTAGAAA TTTCGTCTTC GGAAGCTGTC
    GGGTCGGGTC GGGTCGGGTC GGATCTGTGC TGAGTGTAGA AGAAACTTTT
    GTTTTCTATA GGACAGCGTA TTAGGATTTA GGACCAACAA ATTTGGGCTT
    TTAGCTATAG GCCCATTAAA TTTGTCAGCA CTGCATCTGA GCGGTGTCCA
    CAGACTCTAT CGTATACCCA AGGGTACCTG GATAATTACC TCGTTGCATT
    TTTTATTTGT TTGGTCAGCA GATTTTTAGT TGAATGATTG AATTTGCCGG
    CCAACGTTTC GACAGTCTCT ACACCGTCAT GAACACTGAA TCAGGTAATT
    CCGATATCTT TTTTCTTTGT TCTATCGCCG GAGAAATGAA AGAGATGTTG
    AACTGAGAGT TTTTCCAAGA TTCGGATGAT TTTTCATATG ATTGGTTGCT
    TTGGTTTTGT AGTTGTGGAG TTCCTTGGGA ATGTGACCTT GTTGCAGCGA
    TTACCTAGTT CTTCTTTGAA GAGAATAGCT GAAGTTGTTC TCTTCAAACG
    TTATGGTCAG TGATTCTGGG ATTTTGCTTT TGTTCTTATC TTGAAGTCAG
    TTTGATTGGG AATTTCNGTT ATGTTTTGGT GATCTGNATT CAGTGTCAGN
    GCGTGTTCTT GAGTNTAACA CTTGANCAGN GATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 227348 [Map]; Strand: w
      • AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 0; Region: intron1 (5UTR)
      • AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -153; Region: promoter
      • AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: -346; Region: promoter
      • AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: -346; Region: promoter
    Flanking Genome Sequence: 53-4532-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTTG 
    GTGAGTAGAT TCTTCTTGCC CACAAGTTTC TTTCATTGTT TCGTCTTTAC
    GAACTATGGT TGACTTGAAC ATTTCGTAGA TAACAAATTC AACTTGTCTT
    CTCTCTCTGT AATTCGTGTC TTCTTCAGCA GCCAAAAGAA ATCACNTTGA
    TTGTTAAAAA TTCTTCTTTT TTTATTTTAG AGTAGTTGGT GGTGGTTTCG
    GACACAAATC TTGGAACACA AGCT

AT4G00500.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 561 Blast hits to 561 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 171; Fungi - 76; Plants - 213; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00500.2

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00520.2

Model type
Protein coding
Short Description
Acyl-CoA thioesterase family protein
Computational Description
Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 3429 Blast hits to 3402 proteins in 976 species: Archae - 0; Bacteria - 1910; Metazoa - 393; Fungi - 300; Plants - 65; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00520.3

Model type
Protein coding
Short Description
Acyl-CoA thioesterase family protein
Computational Description
Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR