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53-4548-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25712790 [Map]; Strand: c
      • AT1G68526.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -552; Region: promoter
      • AT1G68530.1 - [+] show detail - 3-ketoacyl-CoA synthase 6
        Distance: 0; Region: exon2 (3UTR)
      • AT1G68530.2 - [+] show detail - 3-ketoacyl-CoA synthase 6
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 53-4548-1 - 5-prime edge 
    GGTTTAGTAA CGGTTTGATT TTGTGTTACG GTTTAGGTTT ATTTGGTCTC 
    GGGATTTGGT TTAAAGGGGA TTGAGAAATG GGAAGTTAGA GAGAAGAAAA 
    AGCAAAGCAT AAATGTTTGT ATTTAATTGC TCTGCATATA CTTAAATCTC 
    TGCTTTTCAT TTGGGGTATT TTTTAGTTTC TCGTGCTGTA ATTAATAACT 
    TGTGGTGTAC TCAAATAAGA ATATTTCTCT CTGTTTTATT ATTTTTAAAT 
    TGGAGAATAA ACTTCTTTGT TTTCATCGCT GCCTTATATA TATTGCTTCT 
    GATTTGGGTT GACCATCCAT CCAGTTTGCA GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25712906 [Map]; Strand: c
      • AT1G68526.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -668; Region: promoter
      • AT1G68530.1 - [+] show detail - 3-ketoacyl-CoA synthase 6
        Distance: 0; Region: exon2 (CDS)
      • AT1G68530.2 - [+] show detail - 3-ketoacyl-CoA synthase 6
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 53-4548-1 - 3-prime edge 
    ACTAAACCGT TCAAAGACGT TTTCAGTTTA GAGTTTGACA ACTTCGGGAA 
    TAAAGACAGG GTAACGGTCG ATACAATCGG ACCATGGTCC GTCCTTAGGT 
    GTCTTAATCG TACGGTTACA CTTCCACACG GCAGAGTTAC ACTTGAAACC 
    ACTCCCAAAC GCGATTTGCC AAACGCGATC GCCTCTCCTC ATTCTCCCTT 
    TAGACTCGAT GTAGCTAAGC TCGTACCATA ACGATGAAGA TGACGTGTTA 
    CCAAAACGAT GTAGTGTCAT TCTTGAGGCC TCAACGTGTT CTCCTGATAG 
    TTGTAGATTC TTTTGGAGCT CGTCGATCAC CGCTCTGCCT CCTGCGTGAA 
    TGCAAAAGTG TTCGAAGGCC AGCTTGAAAT CCGGTATGTA TGGTTTCCAT 
    TTCGGGTTGA AGATTTTACG TCCGATTAGG GACGTGAGGA AGAGAAGTTG 
    TTCTGACGCC GGTAGGACCA AAGGACCTGT TCAAACAAAT TCATCTATCA 
    AAACCAAAAA CGTACCATAA TTCCTTAAAC CTAAGCCAAA CCAAACTTTG 
    CTNTAAATCA TAATAAAATT TATATCGAAC AAACCGAATT GAATGCAACC 
    GAATAGAGTA ACCTAAATTT NCATAGAAGT GAGACATATA CCAAGAAAGT 
    ACATTTAACC ATANTAACAN AACATATNTN GAGATNGAGT ANTTATTTCT 
    GTTATTTAAA ACCNAATNGA AGTNAAAACG GANCCNACCA ATNA

AT1G68526.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G68530.1

Model type
Protein coding
Short Description
3-ketoacyl-CoA synthase 6
Curator Summary
Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational Description
3-ketoacyl-CoA synthase 6 (KCS6); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: in 7 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 5 (TAIR:AT1G25450.1); Has 4523 Blast hits to 4503 proteins in 1079 species: Archae - 0; Bacteria - 1483; Metazoa - 0; Fungi - 25; Plants - 2866; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G68530.2

Model type
Protein coding
Short Description
3-ketoacyl-CoA synthase 6
Curator Summary
Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational Description
3-ketoacyl-CoA synthase 6 (KCS6); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: in 7 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 5 (TAIR:AT1G25450.1); Has 1620 Blast hits to 1616 proteins in 389 species: Archae - 0; Bacteria - 691; Metazoa - 0; Fungi - 0; Plants - 849; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Link
InterPro Scan - TAIR