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53-4564-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 3459337 [Map]; Strand: c
      • AT2G07729.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 53-4564-1 - 5-prime edge 
    TTCCCAAGCT TTTAAGAGCA TGGTTGNAGG CTTANGTTGN AATNNNNANN 
    CATACACATG ACGTCAAGNC ATATGCAGNC TACNANACAC TAACCAACCT 
    TCTTGTANCT TNTNANNGGT ACCGATCCCG GNCCGANNAC CACGGCATGG 
    CCCNANATGT AATGTGATGA ATTGTATAGT TGCATCTGTG ATTGTGATGA 
    ATTGTATAGT TGAGTCTGTG AACCGGTGTT GTATAAACCG GTGTAGGTAC 
    TTTTCTCTCC TTTGGTTAAA GCTCCGGAGC CTCCCTAGTA GTAGCTCAAT 
    ACCCTGAGTA GCTGCGAGAG TCTTACTCCT CAGGTCGGAA TATGAATAGC 
    CAGGCGGTTT GCGTAGCCGC TCTGCTCCTG CCGAGATAGA CTGTTTGTGT 
    TGTCCTTTGT TGGTTTCCGT TCTGACTTCC CTATGGTCCG AGTGGAAAGA 
    AGCGGCCAAA AGGATTAGAA AAGATTCCAC AACGGGAAGC AAGGCAGCCT 
    TTACCCAGGT TACCGAACCT AGAGAACAAG GGAGAGCAAC TAGCGAACCA 
    TTATAGTATT AGCACAATCA CTTTCTCTGT CTCCAATCCC TTTATGTCCA 
    CGTAGGAGGA TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19446201 [Map]; Strand: c
      • AT2G47390.1 - [+] show detail - Prolyl oligopeptidase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G47400.1 - [+] show detail - CP12 domain-containing protein 1
        Distance: -653; Region: promoter
    Flanking Genome Sequence: 53-4564-1 - 3-prime edge 
    CTTGGGAAGT AGAAGGAGAG AAGAAGCCGG TGACGGAGAC GGCGGAGATA 
    AATGGCAGAG AGGTGAAAGA GAGAAACGAT GACAAGCT

AT2G07729.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.4e-67 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR

AT2G47390.1

Model type
Protein coding
Short Description
Prolyl oligopeptidase family protein
Computational Description
Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106); BEST Arabidopsis thaliana protein match is: acylaminoacyl-peptidase-related (TAIR:AT4G14570.1); Has 4880 Blast hits to 4877 proteins in 846 species: Archae - 179; Bacteria - 3027; Metazoa - 477; Fungi - 49; Plants - 145; Viruses - 0; Other Eukaryotes - 1003 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47400.1

Model type
Protein coding
Short Description
CP12 domain-containing protein 1
Curator Summary
CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle.
Computational Description
CP12 domain-containing protein 1 (CP12-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of reductive pentose-phosphate cycle; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: CP12 domain-containing protein 2 (TAIR:AT3G62410.1); Has 264 Blast hits to 264 proteins in 70 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR