1. Home
  2. Mutant Lines
  3. 53-4571-1

53-4571-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23105640 [Map]; Strand: w
      • AT3G62460.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: -16; Region: promoter
    Flanking Genome Sequence: 53-4571-1 - 5-prime edge 
    CTTAGAAACA TGGTTTTGAC GGAGTAAAGG AAGACGAGAG AGATGCCGCG 
    CAAATAGGGT TTTCTTTCGT ACCTACAGAA ACCCTATTAT TATACCAACC 
    TCCATTGACG AAGAGAAGCA CCAGTCCTTT AAACTAATAA GCCCATTTGT 
    AAATGGGCCT TCTTTTAGAC CCTATAAGAG CAAACTCTCT CTTTTCTTGG 
    CTAATACTGT AATTGTTTTT TTTGTAATAA CCCAAAACCA AATTTCTCTT 
    AGTTTTCTTA TTAATTCAAT TGTTCATATA TTGTTAGCTT CTTTCTTATT 
    TCTTAAATCA TAAAACAAAA TAATTTATAT ATTAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23105524 [Map]; Strand: w
      • AT3G62455.1 - [+] show detail - transposable element gene
        Distance: -944; Region: promoter
      • AT3G62460.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4571-1 - 3-prime edge 
    TTTCTAAGTC AGTGCCGGAG CTTTAAACCT TTGCTCGAGT CTCGTCTACC 
    TTTGCTCCGC CTCTCTCTCT CTAAATGTCT CGATCAGTCC TTCAAAACCA 
    CGGCTAGTAG CGAATACGGT AGTAAGAATA TCCCTTACGC TCTTCTGGGA 
    GATCGACCAC TAAAAGATCA TAAGGCAGGC GTCTTCTGGG ACTTGGAGGA 
    CTACAAGATC CCTGACGGTC TCAGTGCTGG TGAGGTTTCG AAGAACATCA 
    AAACGGCTTT TGCGGAAATG GGATATCCTG GTACGGTCTC AATCAAGGCT 
    TATGCTGATG AGACGAATCG AAGGATC

AT3G62455.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 7.1e-232 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT3G62460.1

Model type
Protein coding
Short Description
Putative endonuclease or glycosyl hydrolase
Computational Description
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62210.1); Has 141 Blast hits to 133 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR