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53-4582-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212090 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 53-4582-1 - 5-prime edge 
    GTTTTTATGA TGTTTTTTTT CATAAAGCAG CTCATCCCAG CTCGGGTTAT 
    CAAAGACTAT GACTTGCACT TCCCTGAGAG TATCACTCTT GTCGATCCAC 
    TTGTGAAAAA ATTCGGGACA TTGGAGAAGC AGATCAAGAT TCAGACAAAT 
    GGTAGTGTGT TTGTCAAGGG ATTTGGCAGT ATCATCAGAA GGAATAAAGT 
    GAAGACAACG GATAAGATGA TATTTGAGAT CAAGAAGACT GGTGATAATA 
    ACCTGGTTCA AACAATCAAG ATTCACATTA TCAGTGGATG ATTATTTATA 
    TCTCTCTCTC TCTCTCTCTC TCCATCTCTC TGTCTTTAGT NACGTGTTNN 
    GGAGTTAAAT CAAGATTATT GNGGTGTATT GAATTAATGT AAGAGTTTTT 
    AATTTCTAAA ACTTATCAGA TCTATACAAA TTTGTAGTCT CTCAAGTCTC 
    AATAGCTTTC TTCATTCATA CATATAGAAT GCATTGNACT TTACGCTGTT 
    CATATTAATA TCAGANACAT TATAGTAAAA TGGCAAATGG GTTTGGGTTC 
    TGTTTTGGTA TTATCCCTCA NTTTATGTCA CANATCAAAN GCAGAAAGAT 
    AAATCACACA GTGACNATAN GNACNACANA TCTTGNGAGA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212199 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: intron2 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 53-4582-1 - 3-prime edge 
    ATNNNACNCN NCACTNGNAC ATATGNGGTA TGAAGNGCGA ATGCNCANAC 
    AACTTGGNNT TGNCTTAGCG CATANAATNN GTNNNAGTAT GNATCACNNN 
    CCCAGGNCCG GTCNANCACG CNTGTCCCAT AATACTTGTC TTTCATCTTT 
    CATCATCATC ATCAGCCCTT AGCATGATCT CTAGAATCAA AAGCCTCAAC 
    ATAATCATCA TCTTCTTCAA CAGGAACATC ATCAGCATCA TTATCAACAT 
    CTTCATCATC AGCATCATTA TCATCTTTCT CGACAGCAGC TTCATCAGCA 
    TAATCATCAC TATCATTGTC TTCACCACAA TTATAATCAG AATCGTCATC 
    ATCCTCATCA AGAGATAAAA CATCATCACT GGCCTGATTT TGTTCATCAC 
    TATCAGATTC CACTTTGATC TCCTCGCTTT GATCTGAACT TCTTCTTATC 
    TTTTTACACA TTGTCCTATG CTCATAGATA CAGAAATGGA AACAACTAGA 
    GCCATCAAAC TCAAACTCTA AGAAATCTCC TCCCTTGAGA TCTTCGTCCT 
    TCACAATCCT CTTCCACCCA TTAACCATAA CGAATTTCTC AGTATCATCA 
    TCACCACAAC ATTTCTTTAA CTCCAATTTC CAAATATTTC CAGAAATGCT 
    TCTAACAGTT ACAGTTTCAG GCAAAGACTT TGGTAAAAAT CTGGTGAAAG 
    AAATGGGTAG TACCTGCATT

AT5G60130.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60130.2

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1).
Link
InterPro Scan - TAIR