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53-4589-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23426293 [Map]; Strand: c
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: -65; Region: promoter
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT3G63440.1 - [+] show detail - cytokinin oxidase/dehydrogenase 6
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 53-4589-1 - 5-prime edge 
    TATGGATACG CATCATCGGA AACAGTATGT ACAATCTTTA CTGATAGAGT 
    TTACTACAGA GAGAGAGAGA GAGAGAGAGA GGCCCTANAT AATNCCACGA 
    NACGACGGGT CATGAGTNTG AGACTGNCTT TNGAAAAATT NGGNGGCCNC 
    GCGCAAGAAT TGCCANTGGA TNATATNTGG ATTNCCTCCT CACAAATTCT 
    NCCCCNCTTG NCCCCGAANT GGGATCTCCN CTCTTCTCTT GTCGTGTNNT 
    GTGGCANATA CTGCTTCAAC CCTATCCNTG CTTNTTCNCT GAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23426409 [Map]; Strand: c
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: -71; Region: promoter
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: -181; Region: promoter
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: -47; Region: promoter
      • AT3G63440.1 - [+] show detail - cytokinin oxidase/dehydrogenase 6
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 53-4589-1 - 3-prime edge 
    TATCCATATA TGTAGTATCC CAATTTCGTA CACAACAGGG AAGATGAAGA 
    AGAAGAAGAA AGAACCAATA CGCACCAACC AAGTATTCAT TCATCCCCCC 
    ATTTGCAAAG GTTGGGCTCT AATGATGTGG GCTTATCTAT TCTCTTAACT 
    TTCTTTCAGG CCCAATAGGT CCCCAAGTTC TATTTATGTG GTCCATTTAC 
    AAAACGACAG ACACGAACTA CTAAAGATTC CAAGCCGTTA ACTTTTCTTT 
    GTTACTTACT CCTATGGACA AAGCAAGCAA ATGATGGCTT TCAATTATAG 
    CTATTAATGA TCTTCACAAG TGAAAATTTC GCTATCTTGT AACAATTAAC 
    TACTAGACTC TTGAGGTAAT AGATATGATG TTCCCTCAAA GTAATTACAA 
    CTTAACTTAG ATAAATATAT AGTGATTGAA TACAAACAAA AAAATAGACA 
    AACCAACCTT TCTTTTTCTG GTGAATAATC AATCTCTTCT TGTGCTTTTT 
    TTATATATGA TATAATTAAT ATTAAGGTCA CCTGTGGGGG AGTGGTCCAT 
    TGCATAACAT TCACGGGACT CATTTACTAA CACTCTTGTT TAATGAATGG 
    TACAACAACC AACCTTCCCC CCATCTTCTT CTCTATCTAT CTTACATCCA 
    CGTCTNCCTA ATTGCTCTTC ACCTTTTTTC CTTTTTTTTG GTTAATCTTC 
    TCTTCCTGCA ATGACN

AT3G63440.1

Model type
Protein coding
Short Description
cytokinin oxidase/dehydrogenase 6
Curator Summary
This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase/dehydrogenase 6 (CKX6); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6490 Blast hits to 6485 proteins in 1279 species: Archae - 163; Bacteria - 4080; Metazoa - 140; Fungi - 1069; Plants - 530; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63445.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.3

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR