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54-0049-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19539741 [Map]; Strand: c
      • AT2G47650.1 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon5 (CDS)
      • AT2G47650.2 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 54-0049-1 - 3-prime edge 
    NGATTACAGT TACAGTTGAT GTGCACAAAT TATTCCTATC AATCCTAGTC 
    TGCTTACCAT CACCATAAAC AGTCAAAGGC TCTTTTCTTA ATGCCTGCAC 
    AACAATCATC ATTACTTAAT AAAAGGTATA ATTCCGTTGA TCATTTATTA 
    AGCCACTTAA TCTAACACAA AGTCCTCCGC ACCTGGGCAA CGAAGTTGCT 
    AACCACACGA CCGTCATCGA TACACATCCT TGGGCCATAA GTGTTGAATA 
    TCCTAGCAAT CCTAACCTGT TGAGGAATAA TAAATCAGTC AAAATCTGCA 
    TCTGCATTTT CTAGCAGCGA

AT2G47650.1

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: cotyledon, male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 44652 Blast hits to 44610 proteins in 2978 species: Archae - 851; Bacteria - 26010; Metazoa - 746; Fungi - 333; Plants - 1297; Viruses - 49; Other Eukaryotes - 15366 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47650.2

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2).
Link
InterPro Scan - TAIR