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Mutant Lines
54-0065-1

54-0065-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 17861945 [Map]; Strand: w
- AT4G38010.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
  Distance: -684; Region: promoter
- AT4G38020.1 - [+] show detail - tRNA/rRNA methyltransferase (SpoU) family protein
  Distance: 0; Region: intron1 (CDS)

CCCATCAGGT ATGTATCAGN GATCTTGTAC TCTNTATTNT TTTTCATTGC 
TACTGAGAGA ATTGNGGAAA GTAGTTNCCT TTTTTACTGN GTTCGATTGA 
TTTCATGNGA AATTGAGTTT CAAGGAGATA ACTTTAAAGG CGTTGTTCAC 
AGGGAAGTNT GTNTGTTTCA AACGAATAAG CAAGGAATGA CCACTGAAAT 
TGAGTGCCTA CTTCTTCATG AGGAAGCTAA NATCGCACAA GGATTAGAGA 
GTCTAAGTAT CCGAATTGTT AGAGTAAGTT CTTTAGTGAT GAAGAAACTC 
TCTGGAGTGC AATCTACTGA ATCTGTTGAA GCCATTGCCT TGATGAGAAT 
CCCTAGCAGC TTTACTGATC TTAAAGATGA TAAAGACATC ATAACAGACT 
GCAACAAATG GTTCCCTTCT GCTCACAGAG TTCTTGTTCT GGACAGCATA 
CAGGTTTAAC CGTAACTTCT TATCCTTATG AGCTTTTGCT GGATTGTTTT 
AGAGAACAAA ATCTTGACGC TTAGTTTAGT GATCATGTCT TGATCAGGGA 
AGGGAATTTG GATTGGTAAT AGTTGTCTTT CGATGTTGTT GCAGGATC

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 17861829 [Map]; Strand: w
  - AT4G38010.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
    Distance: -568; Region: promoter
  - AT4G38020.1 - [+] show detail - tRNA/rRNA methyltransferase (SpoU) family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 54-0065-1 - 3-prime edge
```
CTGATGGGGA TAGTTCCGAC GACAAGAACA GAGCCATGAG CGTGGCGATA 
CGAGGAACTT TGGCGGAGCT TCAAGCAGTG TTTGACAAAA GGGTTTGTAG 
TACTGGTGAT AGAATTTACA TGAGACGGCA ACNGGAACTC TATTCGCCGG 
AGATTTATCT GAACCGTAGA TAGAGAGATC ATCTGAAGGG TTTATCTGAA 
TCTGGGTTCT CGGTAATTGG GCTGACGAAG CTCGAAGCT
```

AT4G38010.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1); Has 36420 Blast hits to 13424 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 28; Fungi - 56; Plants - 35898; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38020.1

Model type: Protein coding
Short Description: tRNA/rRNA methyltransferase (SpoU) family protein
Computational Description: tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 12174 Blast hits to 12170 proteins in 2688 species: Archae - 7; Bacteria - 9680; Metazoa - 153; Fungi - 96; Plants - 106; Viruses - 0; Other Eukaryotes - 2132 (source: NCBI BLink).
Link: InterPro Scan - TAIR