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Mutant Lines
54-0075-1

54-0075-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 2717994 [Map]; Strand: c
- AT3G08940.2 - [+] show detail - light harvesting complex photosystem II
  Distance: 0; Region: exon1 (CDS)
- AT3G08940.1 - [+] show detail - light harvesting complex photosystem II
  Distance: 0; Region: exon1 (CDS)

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCC GTTATCCAAA TCGAATTGGA GATACTCTGC 
CGGTTTACCT AACCCAAAAG GATCAAACCC GTAGTCCCCG ACAAGTGAAC 
CGTCGAGATA TTCGGGTGAT TTTGCGCCTG GGAACCATAG AGGCCGGTCT 
GAGATAACCG TCTTAGCCTT TTTGGGAGAT GCTTTCTTGG TTCCGAATCC 
GAACCGGGCT GTGAACCGGC TTGAATTGGA GCTAATGTCG GAAACCACCC 
GGGTACCCAT GATTGAAGAA GCAGCAGCGG CGGTTGAAGT GGCGGCCATC 
TCCGGCGTCG TTTGTTAGTT ATGTCGAGTT TGCGGTTTGT AATTTTTCTG 
AAGCAAATGG CGTTTTTAAG TGGCGGTATG TGTGTGGGAG AGATC

3 prime edge [+] show sequence

Chromosome: 3; Position: 2717997 [Map]; Strand: c
- AT3G08940.2 - [+] show detail - light harvesting complex photosystem II
  Distance: 0; Region: exon1 (CDS)
- AT3G08940.1 - [+] show detail - light harvesting complex photosystem II
  Distance: 0; Region: exon1 (CDS)

AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
CTTGGACCAG AACTTAGCCA AGAACTTATA CGGAGAAGTG ATCGGGACCC 
GTACCGAGGC GGTGGACCCC AAATCGACGC CGTTTCAGCC ATACAGTGAA 
GTCTTCGGGC TACAGAGATT CAGAGAATGT GAGCTGATTC ACGGTCGGTG 
GGCAATGCTC GCCACTCTCG GCGCTATCAC CGTCGAATGG CTCACCGGTG 
TTACTTGGCA AGACGCCGGC AAGGTATCGT CTCTTTTTCG TCGTTTTTAG 
CGTTTGCGTT TTGCGTTTTG GCATTGTCTG ATTGTCGGTT TCTGTGTTCT 
ATCAGGTAGA GCTAGTGGAT GGATCGTCTT ACTTAGGGCA GCCATTGCCG 
TTCTCTATCT CGACATTGAT ATGGATCGAA GTGTTAGTGG TCGGCTACAT 
TGAGTTCCAA CGAAACGCTG AGCTGGACTC GGAGAAGCGT TTGTATCCAG 
GAGGCAAGTT CTTTGACCCG TTANGATTAN CGTCTGATCC GGANAANAAG 
GCTCANCTTC ANCTANCTGA NATCAAACAT GGNCNTTTAN CCATGGNTGG 
GTTCTTGGGT TTTGNNGNNN ANGCNGNTCN NCCNNNNNNN GANNNTNNNN 
NNNNGGGNNA NNNNNNNT

AT3G08940.1

Model type: Protein coding
Short Description: light harvesting complex photosystem II
Curator Summary: Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of photosystem II
Computational Description: light harvesting complex photosystem II (LHCB4.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT5G01530.1); Has 1155 Blast hits to 1131 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1079; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G08940.2

Model type: Protein coding
Short Description: light harvesting complex photosystem II
Curator Summary: Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of photosystem II
Computational Description: light harvesting complex photosystem II (LHCB4.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT5G01530.1); Has 2312 Blast hits to 2241 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1976; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).
Link: InterPro Scan - TAIR