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54-0085-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26769771 [Map]; Strand: c
      • AT5G67070.1 - [+] show detail - ralf-like 34
        Distance: 925; Region: intergenic
      • AT5G67080.1 - [+] show detail - mitogen-activated protein kinase kinase kinase 19
        Distance: -2955; Region: intergenic
    Flanking Genome Sequence: 54-0085-1 - 5-prime edge 
    GTCAATNANG GTCATGACGA TGATATCCAC AGTCGAAAGT GATGGAAGNT 
    TCCTGTGTGG ATATGGAATT TAGATNGACC CCTTTGAAGT ANGGAGGGAN 
    ANGGCAACGT CATATCACAC CCTTTATCAT TGCATAATCN TTAATTTTTT 
    GTTTCTACGT ATNTACTAAA AGTCAAACTA AAATATATAT AGTATCTTTT 
    AGGACAAGGA CGATTAGTCT TTTATTAAAT TCAAATTTTG GTCATCTCTA 
    AACCAAACGC ATAATCNGCC GCCAAACNCA AGTTCATGCA TTTCAATTTA 
    AACATGTTTC TTATAATTTG AACTATCAAG GTGGGTCAAA GGTCATCCTA 
    AAACATACCA AATACAANTC GTTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26769884 [Map]; Strand: c
      • AT5G67070.1 - [+] show detail - ralf-like 34
        Distance: 1038; Region: intergenic
      • AT5G67080.1 - [+] show detail - mitogen-activated protein kinase kinase kinase 19
        Distance: -2842; Region: intergenic
    Flanking Genome Sequence: 54-0085-1 - 3-prime edge 
    TTATTGACTG ACCTACAAGG TTAATTCCAC TTGGGCGTCN AAGTTGAATT 
    TGAACGTGGA ATAAACCAAC TGTTTTGATC CAGTTTTAAA ATAGAGTCGT 
    GTGTGACCCC AACCGATATA TACTGTTTTA TTTTGTATCT TCTATTATAC 
    TACATACTTC CACTATAGTA GAAGTCTAGA AGATAAAGTT AATTTCGTGG 
    TACCACACCA TATATATAAA AGACCTAGAA TTTGACGTTA TCTTCGTGTA 
    GGAAGATGCC TCGCACACTA CTGTATAATG TTTAAGAATT CACATAAAAT 
    TAANTAGTTG TTAAGA

AT5G67070.1

Model type
Protein coding
Short Description
ralf-like 34
Curator Summary
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational Description
ralf-like 34 (RALFL34); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: rapid alkalinization factor 23 (TAIR:AT3G16570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67080.1

Model type
Protein coding
Short Description
mitogen-activated protein kinase kinase kinase 19
Curator Summary
member of MEKK subfamily
Computational Description
mitogen-activated protein kinase kinase kinase 19 (MAPKKK19); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 20 (TAIR:AT3G50310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR