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54-0104-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19344399 [Map]; Strand: w
      • AT2G47090.2 - [+] show detail - zinc ion binding;nucleic acid binding
        Distance: -58; Region: promoter
      • AT2G47090.1 - [+] show detail - zinc ion binding;nucleic acid binding
        Distance: -89; Region: promoter
      • AT2G47100.1 - [+] show detail - pre-tRNA
        Distance: -28; Region: promoter
      • AT2G47110.1 - [+] show detail - ubiquitin 6
        Distance: -236; Region: promoter
      • AT2G47110.2 - [+] show detail - ubiquitin 6
        Distance: -236; Region: promoter
    Flanking Genome Sequence: 54-0104-2 - 5-prime edge 
    CAGTCAACGA CTAAGCGTTT TATGTAATCG ATATCATAAT TCAAAATTAT 
    TCAACCTTTA ACATAATAAA AGGGATTAAC ATAATAAGTT AGCCAATATG 
    GGGATGTAGC GTCATATGGT AGAGCGCTCG CTTCGCATGC AGAGAGGCAC 
    GGGGTTCGAT CCCCCGCATC TCCAACTCAT TTTTTAATTT TCTGAGATTC 
    GTTAAAAGGC CTTTGAAGCC CAATGTAATT AATAAAACCC ATTTTCAAAG 
    GGGTAATTAC GTAATTGTAA AAGCGAGCTC CAAAACCCTA GTTTCTCAAC 
    CACTACTCTT TTATTTCTTC TCACCACTTA AAGAATTTCC CCAGAAATTT 
    TCTTCCGCCG TAAAAGCAAA AAAAGATGCA GATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22860025 [Map]; Strand: w
      • AT3G61750.1 - [+] show detail - Cytochrome b561/ferric reductase transmembrane with DOMON related domain
        Distance: -771; Region: promoter
      • AT3G61755.1 - [+] show detail - pre-tRNA
        Distance: -102; Region: promoter
    Flanking Genome Sequence: 54-0104-2 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTGACTGA 
    TACCGATCCC GCCATGCGTA ATAGTAATAC TGTTTAAATT GTTTTACATT 
    ACCATTTTGC AATTGCAACA CAATACCTTT TTTCTCATTT GAGTTTGTGT 
    TTTACAACGA ACAAATGAAA TTGTTTGTTT GTGTGATTGG TACTCATGGA 
    AGCTGTAAAG CTGTACTCAT TGGTTAATTT ATTATTGTTT ACTTTGTTTC 
    CAAGTTCCCT TCCAATATCT CCTCCAAGAA AAGAAAAGAT GATGTTGATC 
    GTGGCACTAT CCTGACCAAA TATACCTAAT GAGTAATGAT TCAGACTAAG 
    ACTGATCCAC TTCCCACTAT GGTCCAGTTT ACGACCCCAC TCTCTCGCTC 
    CCATCTCTGT CTTCTTCTTC TTTTTTTCCC TAAATAAGCA AAGTAAAAAA 
    CTCCAGATTG TCCATATCTT AAAAATCTAT TCGTAATTTC TCAACCTCAA 
    ATAGCAATTG CCAATTGTTT TAACTGGCAA AGAAAAAGCA ATAATTTCAT 
    AGCATCTTGG TATTTTTCTG TCGGTTCACG TGTCGATTTA GTGACAGAGG 
    GGACATAAAT TGTCCGATAC TTAACCAGTG AAACATCAAC CTCCAAGTAT 
    CTTTCTCAAA ATCCAACCGG AGCTGATTTA AAACAATTTG ATGATTATGA 
    TTGATCTCCA TCTCCAACCA CTTTCACCAC CAAACTCAAT CACTCTTCTT 
    CTTCTTCAAG TAACCATCN

AT2G47090.1

Model type
Protein coding
Short Description
zinc ion binding;nucleic acid binding
Computational Description
zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G62240.1); Has 6997 Blast hits to 1745 proteins in 389 species: Archae - 0; Bacteria - 1326; Metazoa - 1009; Fungi - 441; Plants - 119; Viruses - 26; Other Eukaryotes - 4076 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47090.2

Model type
Protein coding
Short Description
zinc ion binding;nucleic acid binding
Computational Description
zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G62240.1).
Link
InterPro Scan - TAIR

AT2G47100.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ala (anticodon: TGC)
Link
InterPro Scan - TAIR

AT2G47110.1

Model type
Protein coding
Short Description
ubiquitin 6
Curator Summary
polyubiquitin gene
Computational Description
ubiquitin 6 (UBQ6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosolic small ribosomal subunit, intracellular; EXPRESSED IN: whole plant, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 5 (TAIR:AT3G62250.1); Has 12701 Blast hits to 7389 proteins in 781 species: Archae - 108; Bacteria - 19; Metazoa - 5539; Fungi - 1408; Plants - 3106; Viruses - 188; Other Eukaryotes - 2333 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47110.2

Model type
Protein coding
Short Description
ubiquitin 6
Curator Summary
polyubiquitin gene
Computational Description
ubiquitin 6 (UBQ6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosolic small ribosomal subunit, intracellular; EXPRESSED IN: whole plant, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 5 (TAIR:AT3G62250.1).
Link
InterPro Scan - TAIR

AT3G61750.1

Model type
Protein coding
Short Description
Cytochrome b561/ferric reductase transmembrane with DOMON related domain
Computational Description
Cytochrome b561/ferric reductase transmembrane with DOMON related domain; FUNCTIONS IN: dopamine beta-monooxygenase activity; INVOLVED IN: histidine catabolic process; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593), DOMON (InterPro:IPR013050); BEST Arabidopsis thaliana protein match is: Cytochrome b561/ferric reductase transmembrane with DOMON related domain (TAIR:AT3G07570.1); Has 634 Blast hits to 633 proteins in 115 species: Archae - 2; Bacteria - 2; Metazoa - 111; Fungi - 103; Plants - 398; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61755.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ala (anticodon: CGC)
Link
InterPro Scan - TAIR