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Mutant Lines
54-0106-2

54-0106-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 1958304 [Map]; Strand: w
  - AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: -5; Region: promoter
  - AT3G06433.1 - [+] show detail - pseudogene, expressed protein
    Distance: -597; Region: promoter
Flanking Genome Sequence: 54-0106-2 - 5-prime edge
```
GACGCCATCG TCTTCTTCCT TCACACCTCT CTGNCTCTCN GNTAACGGAT 
AATTCCCGTC GATACTCATT TCGGTTGGAT ATGGTAAAAT ACCGGTTTAT 
ATAACCGAAC CGGAAACACA TTTGATCCGT TCAAATCCCT TAAAAACCGG 
ATCGTATTTT TAAATATGAT CACATAATTG ATCATTTAAN AATNATACGA 
GGCTATTTTT TTGGTGTNCA AAAAGATAAA AATAATNATA TGAAGCTCGC 
ATCTCTGTAA GT
```
3 prime edge [+] show sequence
1. Chromosome: 3; Position: 1958191 [Map]; Strand: w
  - AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT3G06433.1 - [+] show detail - pseudogene, expressed protein
    Distance: -710; Region: promoter
Flanking Genome Sequence: 54-0106-2 - 3-prime edge
```
ACAATGGCGT CAATGTCTCT CTCCTTTTCT TCTTCGCNAT GTTCATCCAG 
AATCCCCGAA GGTAAGCGTA GGTTTCGTCA CAGAGATGTG GGCATCGTTA 
GATGCGTTTT GGCTGCTTCG AAATCTTCTC CGGGAAGTGT TACGAAGAAG 
ANGCTTTGGA AAGACGGCGA ATTCCCCGGA ATCACGGAGC CGGTTAATCA 
GAGAAGAACT CCGATAAAGA ATGTGAAGAA GAAACTTGAC AGGAGAAGCA 
AAGCTAACGG ATG
```

AT3G06430.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link: InterPro Scan - TAIR