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54-0120-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 269491 [Map]; Strand: w
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-0120-1 - 5-prime edge 
    CTCAGGAGAT TGTACCGGAG ACGTCGAATA AACCGGAGGG GGGACGTATG 
    TGTGAGTTGA TGTGTAGCAA AGGTCTGCGT AAATACATAT ACGCGAATAT 
    CTCTGATCAA GCTAAGTTAA TGGAAGAGAT TCCTTCAGCT TTGAAATTGG 
    CCAAGGAGCC AGCGAAGTTT GTATTGGATT GTATTGGCAA GTTTTACTTA 
    CAAGGGCGTA GAGCATTTAC TAAAGAGTCG CCTATGAGCT CTGCGAGACA 
    AGTTTCGCTT CTTATACTGG AGTCTTTTCT TCTAATGCCT GATCGTGGTA 
    AAGGGAAGGT GAAGATTGAG AGTTGGATTA AAGATGAGGC GGAGACGGCT 
    GCTGTTGCTT GGAGGAAAAG GTTGATGACT GAAGGAGGAT TAGCTGCGGC 
    TGAGAAAATG GATGCAAGGG GTTTGCTTTT ACTAGTTGCT TGTTTTGGTG 
    TTCCTTCAAA CTTTAGGAGT ACAGATTTGC TGGATTTGAT AAGGATGAGT 
    GGTTCGAATG AGATTGCCGG TGCTTTGAAG CGGTCACAGT TTCTTGTCCC 
    TATGGTCTCA GGTACCATAT TCTGTTCTCA CTCGGTGAAT TTCATTGCAA 
    AGGTGGTTCC TTTTGTTGAC ATCATCGACC AACATCAAGT TCCATCTTTG 
    TTTTTCGATA AGCTTTCTCT CAAACTTTCT GCGTTTTTTA TGTACATAGA 
    ATN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 269045 [Map]; Strand: w
      • AT4G00630.1 - [+] show detail - K+ efflux antiporter 2
        Distance: -995; Region: promoter
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-0120-1 - 3-prime edge 
    CTCCTGAGAC GGATGGCTCA CAGTGGCGGT GGTTTCTACA GATACATTGT 
    TCCNCGGAGG CNATAACACT CGGCTGATGG AAACTTATTG TTCCGCGCGG 
    CGGAGGACAA CAGCCGGTGT ACATCGTCGA GTTTGGAATN AATTGCTGTT 
    NTCGGATTGA CATCNATGTG CTNCTGAATA TCATCGAATT GGCCGTTNGA 
    ATGTTNCCAC TGCANCTNGA NAACGCGAGG TAATTCGTCT ATGGATTTCA 
    NAAATTNAGG CTGCTTAGAT NGACCGATCG TAATGTCCAT ACTTGTAGAC 
    TCTGNTTCGA CAATCTTCCG TAATTACTCT TCGTNGCTGT NCANATTGAT 
    NTNAACTTGT ANATNAATGT CCATACTTGT AGACTNTGNA TNNGATTAAT 
    GAAAACATAN CTAGGNTGCN TGATTACCNA CATGNANCAT TATTNGTTTT 
    AAATAGTCAC TAAAGCAGTG GTTTATAACA TGTCTAATCA CAAATAACGG 
    TTCTTGCTCG GTAATATGAA CCCAAAAGTT ACTGTCTTAC TCTACCTGCA 
    CTAATGGGGG TGATGGTGTG CTCTTTTTAG TCTTCAAACA CGATAATCCC 
    ATGATAAAAT CCTTGTGTAC TTGGTTTAAG TTGTGACTTG TGAGTACTTT 
    TAGTTTTAGG TGGGAAAGAA ATGAAAACAT TGTGGGCTGA CGGTACTAGG 
    TAAGCCCAAT AAGGAAAACG ACTCTACGCA ATCAGAN

AT4G00630.1

Model type
Protein coding
Short Description
K+ efflux antiporter 2
Curator Summary
member of Putative potassium transporter family
Computational Description
K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153), K+/H+ exchanger (InterPro:IPR004771), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1); Has 34304 Blast hits to 27699 proteins in 2887 species: Archae - 928; Bacteria - 15112; Metazoa - 9897; Fungi - 1524; Plants - 1371; Viruses - 95; Other Eukaryotes - 5377 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR