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Mutant Lines
54-0124-1

54-0124-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 10488363 [Map]; Strand: w
- AT1G29940.1 - [+] show detail - nuclear RNA polymerase A2
  Distance: -1544; Region: intergenic
- AT1G29950.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: -3335; Region: intergenic

TTGGTGTGTC AAAACATAAT AATTTATTAT TCGACCATAT GATTTGACTG 
ATGCCGTTTG TATTTGAGAG TTTATATCTT TGGCTTCCAA CTAGTAAGAG 
TATCAGATGA TATGATGTTC ACAAGGTAGC CATCAAAATC ACCTTTATCC 
AACTAGTGAT GTAGATTTTG AAAATTCAAT CAGAACTCTC AAAAACATCA 
TAATTGATTT CGGTCACCGG ATTGACCGAT TCTGATTGTA TTTGAAAAAG 
TTTATGCATT TTATTTTTAA CTTCTGAGAA TGTAAGGTGA TATAATAGTT 
AGAAATTAGT CATCAAGATC AATTTCTTCA GTAGCAGCAA GTTTTCATAT 
TACGAGAATA AGAGCATTTT CCATCCATAG CACTAACAAG GCCTTCCCGT 
GAACACT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 10488235 [Map]; Strand: w
  - AT1G29940.1 - [+] show detail - nuclear RNA polymerase A2
    Distance: -1416; Region: intergenic
  - AT1G29950.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: -3463; Region: intergenic
Flanking Genome Sequence: 54-0124-1 - 3-prime edge
```
TAGCNACATG TACACTTGAG TCTNTGTTGG NGAACGNCTT GATCACAAAA 
TCTCACATAC ACAACATTGA TGTCCAGCGT TAATGCGTTA TACCCTTCTA 
GAGATCTAAT TGGTGACACA AAATCTCACG TAGTGTANGT CAGCANAATG 
AATGCGTTTC AGAGCTAAGA TCTTNCNTCT TCNAGCCAAT GCTTTCGAGG 
AACGGTTTTT GTAGATCCAA GAAAGGAATA GAAGCTTTTA TATATATGTC 
CAGACAACAA TATTGGATTT TATATATATG TCCAGACA
```

AT1G29940.1

Model type: Protein coding
Short Description: nuclear RNA polymerase A2
Curator Summary: Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A).
Computational Description: nuclear RNA polymerase A2 (NRPA2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 19116 Blast hits to 18561 proteins in 6776 species: Archae - 498; Bacteria - 7658; Metazoa - 537; Fungi - 3600; Plants - 1857; Viruses - 241; Other Eukaryotes - 4725 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G29950.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT5G50010.1); Has 770 Blast hits to 729 proteins in 71 species: Archae - 0; Bacteria - 2; Metazoa - 29; Fungi - 28; Plants - 411; Viruses - 2; Other Eukaryotes - 298 (source: NCBI BLink).
Link: InterPro Scan - TAIR