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54-0137-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19447446 [Map]; Strand: w
      • AT2G47410.2 - [+] show detail - WD40/YVTN repeat-like-containing domain;Bromodomain
        Distance: -693; Region: promoter
      • AT2G47410.1 - [+] show detail - WD40/YVTN repeat-like-containing domain;Bromodomain
        Distance: -861; Region: promoter
    Flanking Genome Sequence: 54-0137-1 - 3-prime edge 
    ATCTCAGCCT CATCTAAACT TAATTGAGTT TTTTATTATC AATTTCACGA 
    AACTGCAAAT GTAATCGAAC CAAACACATT ATGAAACATA TGTTGTGTAT 
    TGTACTATTC ATATTCATTT ATCACATTAC AATCATCAAC CAAACCAAAA 
    ACACAAACAT AACAACAAGG GACAAGAAGA ACAAACATTG ATCCATACCT 
    AAAGTTTCAT AATTCGAACA TCAAAAACAT ATTTTTTAAT TATCATAAGT 
    ACGACACTCA TCAGTCTCAG GATTATCATT GCAATACTCT TCCAAAGGAT 
    CGGAGCCACC AGCTTTCTTC TTGTCCCTAG CATGACTCGC CGCCGCACTC 
    AGCTCCTCCA CCTCGTCCCA AGCCGCTACA CACTCCCCGC TCACCGGATC 
    ATCAGCGCAT GTCTC

AT2G47410.1

Model type
Protein coding
Short Description
WD40/YVTN repeat-like-containing domain;Bromodomain
Computational Description
WD40/YVTN repeat-like-containing domain;Bromodomain; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT5G49430.1); Has 67123 Blast hits to 29366 proteins in 847 species: Archae - 50; Bacteria - 8348; Metazoa - 26818; Fungi - 14890; Plants - 8157; Viruses - 8; Other Eukaryotes - 8852 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47410.2

Model type
Protein coding
Short Description
WD40/YVTN repeat-like-containing domain;Bromodomain
Computational Description
WD40/YVTN repeat-like-containing domain;Bromodomain; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT5G49430.1).
Link
InterPro Scan - TAIR