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54-0137-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19447562 [Map]; Strand: w
      • AT2G47410.2 - [+] show detail - WD40/YVTN repeat-like-containing domain;Bromodomain
        Distance: -577; Region: promoter
      • AT2G47410.1 - [+] show detail - WD40/YVTN repeat-like-containing domain;Bromodomain
        Distance: -745; Region: promoter
    Flanking Genome Sequence: 54-0137-3 - 5-prime edge 
    GCTGAGATGA TCTTAGGTCA CTCGNNTACG TTCCTTATTA TNTTTTTGTG 
    GATGTGGAGA TGTATGTGTC AAAACGACGT TGAGCCGAGA GAAAGATGAA 
    TTGATCGAGA GTTTCTTAGA CGGTTTTAAA ATTGCTGCCT TGCTGGTATG 
    GGAATTAATC TTTGGTTTCA ACAAGATGGG TAACAACAAA CAAGCCCATG 
    TAATTATGTT GATGCAGTGT AATGGGCTTT ATCAAGCATG GGCCGATGTA 
    CAAATTTGAC ATATAGAATA GAACCAGTTT GTGGCCAGCC TCAAGGTGAT 
    GAGAAACAGT AAATATATTA AGGAATAAGT GAACTAAATA ATTTGA

AT2G47410.1

Model type
Protein coding
Short Description
WD40/YVTN repeat-like-containing domain;Bromodomain
Computational Description
WD40/YVTN repeat-like-containing domain;Bromodomain; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT5G49430.1); Has 67123 Blast hits to 29366 proteins in 847 species: Archae - 50; Bacteria - 8348; Metazoa - 26818; Fungi - 14890; Plants - 8157; Viruses - 8; Other Eukaryotes - 8852 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47410.2

Model type
Protein coding
Short Description
WD40/YVTN repeat-like-containing domain;Bromodomain
Computational Description
WD40/YVTN repeat-like-containing domain;Bromodomain; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT5G49430.1).
Link
InterPro Scan - TAIR