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Mutant Lines
54-0138-1

54-0138-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 449244 [Map]; Strand: c
- AT3G02260.1 - [+] show detail - auxin transport protein (BIG)
  Distance: -755; Region: promoter
- AT3G02270.1 - [+] show detail - Trimeric LpxA-like enzyme
  Distance: 0; Region: exon1 (CDS)

CCNCATNGCT CTATTAATGA CTTGTNTNNA NACGCATCGA GTATCNTTAC 
TCGATGGAAG GGACTTCTTG GGTTCTATGT AAAGAAAAGT GATGAACAGA 
TNGAAGTNNT ATCGANATTG GAAGAGATGT GTGAANAATC TGCCCATGAG 
TTGGGAACTT TTGTTTGCTC NTATTTTACG TTATATGTNT GAGGAANANA 
ATGACCTTTT GCAAGAAGTT GCAATCTNGA GATGGTCGGA TGAGAAACCG 
GAGCCGATGA ATCTGACTAA GTTTATCTGA AACAATGCNA GCCNTTCATA 
ACGTGGCTCA AGGAAACATC TGACGATGAA NATNGCCNNN GATTTG

3 prime edge [+] show sequence

Chromosome: 3; Position: 449372 [Map]; Strand: c
- AT3G02260.1 - [+] show detail - auxin transport protein (BIG)
  Distance: -883; Region: promoter
- AT3G02270.1 - [+] show detail - Trimeric LpxA-like enzyme
  Distance: 0; Region: exon1 (CDS)

CTAACTGCTA GTTTCATCAT AGAGTAGAAT ATTGCACCAG CACAATGTGC 
AGATTCCATG TTATATGACA ACCGGAGTGA GTTTATCTCC AAAACCGCAA 
GGTCGGCTAC AATATTCTCT TCGACAGCCC TTAAGAAGGT GCCATCAACC 
TCTCTCTCAA AGTCAAAGAG ATCATTGTTA ATACTAGTAT TAGCATCGCC 
GGAAGTTGTG ACAACACTTT CATCATCCGT GTCATCATCG TCAATGGCCT 
TAATGATCTC AGCAAGTTTA TCTTTGGGGA TTGGTGGAAC AGAATGCTTC 
CACTCGTCTT CACACGCTTG GCGCCATATG TAACCTGCTC CATCAAGACC 
AAGCTTAGAC TCCATTTGCA AATCTACACC TGACAAAAGA TTTCTTCATC 
NCTGTCTTCT TC

AT3G02260.1

Model type: Protein coding
Short Description: auxin transport protein (BIG)
Curator Summary: Calossin-like protein required for polar auxin transport
Computational Description: BIG (BIG); FUNCTIONS IN: ubiquitin-protein ligase activity, binding, zinc ion binding; INVOLVED IN: response to auxin stimulus, indeterminate inflorescence morphogenesis, photomorphogenesis, root development, auxin polar transport; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Armadillo-type fold (InterPro:IPR016024), Zinc finger, ZZ-type (InterPro:IPR000433), Zinc finger, N-recognin (InterPro:IPR003126); Has 1182 Blast hits to 997 proteins in 123 species: Archae - 0; Bacteria - 4; Metazoa - 768; Fungi - 44; Plants - 189; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G02270.1

Model type: Protein coding
Short Description: Trimeric LpxA-like enzyme
Computational Description: Trimeric LpxA-like enzyme; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process, regulation of translational initiation; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT2G34970.1); Has 3426 Blast hits to 3381 proteins in 843 species: Archae - 306; Bacteria - 1238; Metazoa - 499; Fungi - 246; Plants - 265; Viruses - 3; Other Eukaryotes - 869 (source: NCBI BLink).
Link: InterPro Scan - TAIR