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54-0150-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26083043 [Map]; Strand: w
      • AT5G65260.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -26; Region: promoter
      • AT5G65270.1 - [+] show detail - RAB GTPase homolog A4A
        Distance: -285; Region: promoter
    Flanking Genome Sequence: 54-0150-1 - 5-prime edge 
    CCTCTNCGNC AATCGTCTCT CTCGCTCTCT CTCCGTCGCG ACGTTTGCTT 
    TGTTTTCTTC TGAAAACNCT TANGTCACTT TTTGTCAATT CGGATAGCGA 
    CACGTAATCA ACCAAATAAC GGCCCTTTAN TATATNTTTT TNNNCCTNNT 
    AAGGCCCAAT TTCAAAAGAC TTTTAACATT CGAAATTACC CTATTTGATG 
    ACATCATCAC CCAAAAACAT GCGCCTGACA GAAAGATAAT TGTCGAATCC 
    GTCAAATCTC ACCGAGCCGG CAGAATCCAA CGGTTAATAT TTANAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26082928 [Map]; Strand: w
      • AT5G65260.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G65270.1 - [+] show detail - RAB GTPase homolog A4A
        Distance: -400; Region: promoter
    Flanking Genome Sequence: 54-0150-1 - 3-prime edge 
    AGGAAGAGGA GCACGAGGTT TACGGTGGTG AAATTCCAGA CGTCGGAGAG 
    ATGGATGGAG ATATGGAGGC TCTCAACCCC GATTTGGATA TGGCTGCTGC 
    TGATGATGAT GCGGTTAAGG TCTACTATTA TCTCTTTCTC TCTTACTGTT 
    TTGCTNNTCT TTNTGTGACT GAGCTCGATT GATTTGTTAT CGCGTGTATA 
    TGTGTTTGAT TGTTGTGTTA TTGCTGTTGT AATTCTAGGA GTTGGATGAA 
    ATGAAGAAAC GATTGAAAGA GATGGAGGAC GAAGCTGCTG CTCTGCGTGA 
    GATGCANGCT AAGGTCGAGA

AT5G65260.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65270.1

Model type
Protein coding
Short Description
RAB GTPase homolog A4A
Computational Description
RAB GTPase homolog A4A (RABA4a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4B (TAIR:AT4G39990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR