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54-0154-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26943818 [Map]; Strand: c
      • AT5G67530.1 - [+] show detail - plant U-box 49
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: 54-0154-3 - 3-prime edge 
    CTANANACTC TANNNGTTCC CTANACTCAG AATATTTCAA CCATTGGAGT 
    GTCTAAGAAA AGAAAAACTA CTGCGTCAGC CTCCACAGGG TTTAAAGATT 
    TCTCTAGCTG GTAATTGAAA ACATTCTCTA CCTACTTTGT AAAACCGTTG 
    ACTAGTTTTG ATAGAGACCA AGTCACAAAA GCATTTGTAT GACAACACTG 
    AGCCTTTGAT GTCCAAAATC TGGAGCTGTG TAATAAAGTT GACTAGTTTT 
    GATGGAGCCC AAAAGTCACN AAAGCATTTG TATAACAGCC CAAGTCACNA 
    ACGCATTTGT ATAACATTGA AACTTTGATG TCCAGGAGCT GAGGCTGTAT 
    CTTCNGTA

AT5G67530.1

Model type
Protein coding
Short Description
plant U-box 49
Computational Description
plant U-box 49 (PUB49); FUNCTIONS IN: ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), U box domain (InterPro:IPR003613), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G01940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR