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54-0168-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 605590 [Map]; Strand: w
      • AT3G02780.1 - [+] show detail - isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2
        Distance: -906; Region: promoter
    Flanking Genome Sequence: 54-0168-1 - 5-prime edge 
    TGCACGGACA TCTTGTTTTC TGAAAATGAC ATGGAATTTT CTTAGCTATA 
    ACTAGAAGAT TGCGTAATTG TCAATCTGAT TTGCGTTCTT GATCTTGAGT 
    TTTTATCCGA TACTTTGGGT GATGATTTCT AGGTAGGAGG TGAGTTTTTA 
    TCCGATACGT GGGTGATGAA TGATGATTCT TAGGTAAGAT TTGGTTCGGT 
    TATGGATTTT TCTCGGTTTA GTTCTGGTCA GAAAAATTAC GATATAATTT 
    TCCCGGTTTT GCTTATTCTT TGTCAATTAT GTGTTACATA GTTACATAGA 
    CAATGTCAAT TATAGCTGCA CACTTTTTCA TTCTGAGAAT GGAAATCAAA 
    AAGCTAAATA TATAATAGAT GAATATAATA TGGCTGTTTT AGTAAAAGAA 
    TGCTGCTAAT CAACTTGTAT TTCTTTAATT ATCTTTGAAA ACATATTTTT 
    CCTAACACAT GTGCTAGATT AGTCATATAC CTTGTACTGC AGTGCACATG 
    GTATATATTA GAAGCTGACT CGATACTCTT AACCTCCTCT GTTTTCTCTG 
    TTTTAATAAT TGATTTCATA CCGAAAGTAT ACTACCGAAT GTTATCTTTT 
    AAAATTCAGT TTGATTGGCT ANAGAGGTTT TCTGGACATA AATCAGTTTT 
    TTTTTTNTTT NGATTNNAAA ATNGNNCTGN AAGNNCTNGC NAATTNGNAN 
    CNAANTNCNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 605510 [Map]; Strand: w
      • AT3G02780.1 - [+] show detail - isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2
        Distance: -826; Region: promoter
    Flanking Genome Sequence: 54-0168-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACGGACCG TGCATACGTA 
    CTTTGCAAAT CATCCGGACC TAAGGTTTCC GCTGTTTATG TTCGAACAGA 
    AACAGAGTAC TTCATTTCAA ACAATAAGAA CTAATCTTGA TGATCTAAAA 
    CTTGTCTGAA AAAAGAAATA GAGGTTGTTG ATTTAACATG ACTACAAAGC 
    TATGTAAGAT TCGCTAAACC AGATGACATC AACAACATGA TAGATTTTGG 
    GGTAAGAAGT AGCACATTAC ACTCTTTAAC ATCAAAAGAT AACAAATTTT 
    ATAAAATTGA AACATAGAGT TACTTCTTCA AGCT

AT3G02780.1

Model type
Protein coding
Short Description
isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2
Curator Summary
Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.
Computational Description
isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (IPP2); FUNCTIONS IN: isopentenyl-diphosphate delta-isomerase activity; INVOLVED IN: chlorophyll biosynthetic process, flower development, isoprenoid biosynthetic process; LOCATED IN: cytosol, mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086), Isopentenyl-diphosphate delta-isomerase, type 1 (InterPro:IPR011876); BEST Arabidopsis thaliana protein match is: isopentenyl diphosphate isomerase 1 (TAIR:AT5G16440.1); Has 2187 Blast hits to 2186 proteins in 784 species: Archae - 35; Bacteria - 1163; Metazoa - 210; Fungi - 137; Plants - 180; Viruses - 0; Other Eukaryotes - 462 (source: NCBI BLink).
Link
InterPro Scan - TAIR