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54-0171-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23108129 [Map]; Strand: w
      • AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G62475.1 - [+] show detail - transposable element gene
        Distance: -971; Region: promoter
    Flanking Genome Sequence: 54-0171-2 - 5-prime edge 
    TTCATTATCG CATTCAGATT CAACTTCTTC ATCACATCCA TCACTAACAT 
    TAGAACTACC ACTAGAGAAA CCTCTACACC CAAGACTCGC ATCAAGCAGT 
    TGTACAGAGG AGTGTGGCAA TGGAATTTGA CGGTAAGGAT GATAAGTAGA 
    AGAATGAATC ATACGAGAGA AGAGAGCACC GGAAAATCGT ACTTCCTCTT 
    CTCCTCTCCC GCCGATTACG CGGCTTTGAC TGGAAATGAA TTCNTCCGAA 
    TCGAATGAAG AAGAGCAAAT GAGGAAGCTT CTTAATGAAG TCTGAGTGGA 
    GCTTCTTCTC CTANAGAGAT GGAGCCNTGG A

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 350636 [Map]; Strand: c
      • AT3G02040.1 - [+] show detail - senescence-related gene 3
        Distance: -626; Region: promoter
      • AT3G02050.1 - [+] show detail - K+ uptake transporter 3
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-0171-2 - 3-prime edge 
    ATTAGAANAC TGTCAGTTTC ACTTCACTTC TCGAGGAAAA TTGCTAATCG 
    GAGAAACAAG TGAGTGGAGG AGAGAGACAG ATATAAAGGT TCCCGCGTTG 
    AGAGAGTATT TGCTAATTAA TTAAGGTGGA TATTTGATGC TAGGAGAGGA 
    GAGTGAGAGA TAAGATGGGT TTCGTCTGAA GAGCTCCAAC TTGATTCGCT 
    CAATTGATCT CTTTTGTATC GACAACCTGC NATGGCGCCG GCGGAATCTG 
    GAGTCTCTCC CCGTCNGAAT CCTTCTCAAG TTAGCTCCTT TATGCCNCTT 
    GAACTGTTCN TAGCATGTTT GGCTTTTGCT TTCATTTCTA TCTAAATAAA 
    GACCCTTGCT TTCTTGTGCT G

AT3G02040.1

Model type
Protein coding
Short Description
senescence-related gene 3
Computational Description
senescence-related gene 3 (SRG3); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT5G41080.1); Has 1727 Blast hits to 1696 proteins in 532 species: Archae - 28; Bacteria - 1003; Metazoa - 245; Fungi - 173; Plants - 101; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02050.1

Model type
Protein coding
Short Description
K+ uptake transporter 3
Curator Summary
potassium transporter KUP3p (KUP3)
Computational Description
K+ uptake transporter 3 (KUP3); FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, response to external stimulus; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: Potassium transporter family protein (TAIR:AT4G23640.1); Has 3477 Blast hits to 3392 proteins in 1029 species: Archae - 13; Bacteria - 2401; Metazoa - 1; Fungi - 102; Plants - 838; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62470.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 39079 Blast hits to 12185 proteins in 290 species: Archae - 4; Bacteria - 32; Metazoa - 449; Fungi - 607; Plants - 36694; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62475.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.3e-55 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR