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54-0197-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11582272 [Map]; Strand: c
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 1725; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 4244; Region: intergenic
    Flanking Genome Sequence: 54-0197-1 - 5-prime edge 
    TACTGGTGTC ACTNTCGTTG TATCTGTGAA GAAGAAAGTC ATGCNAGAAG 
    AATCTATACT TATACATACC ACTTTGTTTA TTTCGCTATC TTTATATCTT 
    TATATGTTTA TTGTCTCCAT TTCCGAGCTC TAACATAATC AATCTGATTG 
    GTAAATGATT CAGCAATCAG GTGACAACTC ATATCTCAAT TCCGTGTCAG 
    GAGCAAATGT GAGTGTTGAA GCACTGTTTG AATCAAATTT TCTGCCTAGA 
    TGATTTGGGT TATCTTAATG CCGTCTCAAA ACGTTTCGCA GTTTATACTC 
    ATAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11582392 [Map]; Strand: c
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 1845; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 4124; Region: intergenic
    Flanking Genome Sequence: 54-0197-1 - 3-prime edge 
    ACAGTCATTA GTCCAAATCC CATTAAACCG GATCATGTAA ATATGATGGT 
    TTCGTTCAAG TCCAAGCCAC AACAAAATGA TGCAATGGAT AAAAAAAACG 
    GACATACAAA TAAAGTTAGA AAAGAAAGCA ACATATAATT CCTGGAAAAA 
    TCATTCTGCA ACCAAAATTT GTGGTGTAAG AGGAGATGAA AAACATTAGT 
    CACCTTAGTA CTGGTCAGGA AACATTTGGT TGCCTCATGT GTAAAGGACT 
    CTCCAACAAC TGAAATCCGA TCCATGACAT CGTTAGTATT TACCTGGGAA 
    ATCAAGATGT GATAGAGAAA TATCTTGTGC TTTAATTAGT TCCTGCAAGT 
    TATAAATCAC TTAAACACAT CAGACATATC CATAAAAAG

AT1G32172.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT1G32180.1

Model type
Protein coding
Short Description
cellulose synthase-like D6
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like D6 (CSLD6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose-synthase like D2 (TAIR:AT5G16910.1); Has 3332 Blast hits to 2680 proteins in 615 species: Archae - 13; Bacteria - 1453; Metazoa - 5; Fungi - 21; Plants - 1756; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR