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Mutant Lines
54-0202-1

54-0202-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 26083043 [Map]; Strand: w
- AT5G65260.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -26; Region: promoter
- AT5G65270.1 - [+] show detail - RAB GTPase homolog A4A
  Distance: -285; Region: promoter

CCTCTTCCTC CATCGTCTCT CTCGCTCTCT CTCCGTCGCG ACGTTTGCTT 
TGTTTTCTTC TGAAAACGCT TAGGTCACTT TTTGTCAATT CGGATAGCGA 
CACGTAATCA ACCAAATAAC GGCCCTTTAT TATAACNTTA ATGGGCCTAA 
TAAGGCCCAA TTTTAAAAGA CTTTTAACAT TCGAAATTAC CCTATTTGAT 
GACATCATCA CCCAAAAACA TGCGCCTGAC AGAAAGATAA TTGTCGAATC 
CGTCAAATCT CACCGAGCCG GCAGAATCCA ACGGTTAATA TTTAGACACG 
TCATCATTAA TTAAAAATAT TGACTAATAG TTGACAACGA CGACAATACG 
ACCGTATCAG ATCTCTCTCT GCGTTTAAAA CTTCAAAAAA GCTCACTTTT 
CGGTAAAAGC T

3 prime edge [+] show sequence

Chromosome: 5; Position: 26082927 [Map]; Strand: w
- AT5G65260.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon1 (CDS)
- AT5G65270.1 - [+] show detail - RAB GTPase homolog A4A
  Distance: -401; Region: promoter

GGAAGAGGAG CACGAGGTTT ACGGTGGTGA AATTCCAGAC GTCGGAGAGA 
TGGATGGAGA TATGGAGGCT CTCAACCCCG ATTTGGATAT GGCTGCTGCT 
GATGATGATG CGGTTAAGGT CTACTATTAT CTCTTTCTCT CTTACTTGTT 
TTGCTCATCT TTATGTGACT GAGCTCGATT GATTTGTTAT CGCGTGTATA 
TGTGTTTGAT TGTTGTGTTA TTGCTGTTGT AATTCTAGGA GTTGGATGAA 
ATGAAGAAAC GATTGAAAGA GATGGAGGAC GAAGCTGCTG CTCTGCGTGA 
GATGCAGGCT AAGGTCGAGA AGGAAATGGG AGCTCAAGGT TTTCGTCTCT 
TTGATTTGGT TTTGCTATAA CTCGCTTCTT TGATATGATT ATCATCGTGC 
TTCCCGCAAT TCGCTAGGTT TTTGATAATT GGTAGCTACT TGGTGGTGTT 
TGAATCCATC TTAGAATT

AT5G65260.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G65270.1

Model type: Protein coding
Short Description: RAB GTPase homolog A4A
Computational Description: RAB GTPase homolog A4A (RABA4a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4B (TAIR:AT4G39990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR