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54-0232-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 181282 [Map]; Strand: c
      • AT1G01490.2 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G01490.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 54-0232-1 - 5-prime edge 
    CTNCTNCGCT AACATTTTTC CATGCTCCTG TTATATACAA TGTTGGTCAT 
    CAGAAACAAG TCGCANATCT CTTGCTTAGT TCTCACTTCT AAACCTCACC 
    TCTATATAAA TGGTTTCCGG TCCGATTTAG TCTCCGATTT GGTAGGTAGG 
    TGTAAACAGA GGGAAAAAAA TGTGAAAAAT TTCTTTAATG TTGATGAACA 
    ATCACNAGCT GTTCTGACAG AAGTGTCTCT CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 181398 [Map]; Strand: c
      • AT1G01490.2 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT1G01490.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-0232-1 - 3-prime edge 
    CCTGGGAGAG TAGAAACCGT TTTAAGGGCC TTTTGTTTTG CCCTATCGTC 
    ATGCAAATCC AGCTTTAACA CAATTTTCTG CAAAATTATT ACAAAAGATC 
    AACAAGTTAG AATCATCAAG AGATGTGAAC ACCAAGATGA CATAATCTTT 
    GATTTTTGAG TTTTTTTCTA TCCGGAAGAG GAGCAAGAAA AACAGAGATT 
    TGCAGATTTT AAAGAAGATA CCAAAAAGTT AATGATATGT GTACATACCA 
    CACACAGAGT GACGTGCATG TGTATTTGTG TGAACATATA TAGTAGAGAA 
    ACAGAGTTTT GCAAAAGCAG AGGCATACTC ATCATTCAAT TTATGATTCT 
    TGATTTGAT

AT1G01490.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1); Has 7083 Blast hits to 3987 proteins in 399 species: Archae - 47; Bacteria - 875; Metazoa - 1731; Fungi - 337; Plants - 1157; Viruses - 96; Other Eukaryotes - 2840 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01490.2

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR