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54-0255-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 86039 [Map]; Strand: w
      • AT5G01215.1 - [+] show detail - other RNA
        Distance: -122; Region: promoter
      • AT5G01210.1 - [+] show detail - HXXXD-type acyl-transferase family protein
        Distance: 0; Region: exon1 (3UTR)
      • AT5G01215.2 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-0255-1 - 5-prime edge 
    CTTCTCNTCT AAGAAAACGA CGTANTTTCT GATACAGAGG AATAAAAAGC 
    AAATATCTAA AGTGATAGAG GAACTTAATG GCATGGCACT TTGGACGGTT 
    GAGATTTATC TATAAAGTTT TTAGATATTT CGATCTGAGA GTTGTGAAGC 
    GAACGACGTC TTATGAGTCA ATCTACTGGT CTTAATGTGA CAGTGTATTA 
    TTAATGTACA AAATCCCGTC TTTTTCAAGT TTTTCTTTCT AAATTAACAA 
    CTCTGTATTA TCATTTTAGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 85924 [Map]; Strand: w
      • AT5G01215.1 - [+] show detail - other RNA
        Distance: -7; Region: promoter
      • AT5G01210.1 - [+] show detail - HXXXD-type acyl-transferase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G01215.2 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-0255-1 - 3-prime edge 
    ACGATTAGGT GACTTCTGAT ACGTATTGCA TAAACTCAGC ATCGTTCTCA 
    ATCCCAGTCA TAGTCTCCGG CGCCAGAACT ACTTCCAGAT CCACGCTTCC 
    GTTTCCTTCT CTACCGGGAA ACGCCGAGAT CTTCCCGTCG AATTTATTCG 
    CTCCGCCGCT TCTCACAGCT AACGGTTTTC CCCATCCGAA ATCATTGTCG 
    TACATTGGGA ATCTCGGCGA GCTCCCCATC GTGATCGAAG CTCCATCTGG 
    ATTTCCGAGA GGAAACAGCC TCGGATCGCT TTCCCAAGCG GCGATTCCAC 
    GGCGGAACGT CGCGTCGTCG TGCGCCACCA CGTTCCTGTG TNNCTGTTCG 
    GGGGGAACAC

AT5G01210.1

Model type
Protein coding
Short Description
HXXXD-type acyl-transferase family protein
Computational Description
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT2G39980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01215.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01210
Link
InterPro Scan - TAIR

AT5G01215.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01210
Link
InterPro Scan - TAIR