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54-0265-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21416323 [Map]; Strand: w
      • AT3G57810.2 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: 0; Region: exon2 (5UTR)
      • AT3G57810.1 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: 0; Region: exon2 (5UTR)
      • AT3G57810.3 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: 54-0265-2 - 3-prime edge 
    TTGCTACAAC ATGTTGCGTT GGAGAGTACC AAATCATCAT ATCTTTTATA 
    AGTAAGAGTC CCCCAATTTC NCGATACCTA CACANAGANC AACAACGCAT 
    GTTTCCAAGT CTTTTACATT GATANATCCA ATGAGGCANT GGTGTAGTAA 
    NCNAAATCAT AACTAGATCA CAAAATATNC NTTAAGGATC GCTAAAAGAG 
    CANGCTATCT AGNTAAGAAC TGCAAATTNG CAGGTNATGT TTCAACTNAA 
    TTTCTAATAT CNNAAAAATG AAACCAACAC ACAATCCAAA CGTATTGAAA 
    TCGAAGAAAC GAAGAAGGAA AGATNAAATT GCGTACGGGT ATCANAGAAT 
    TATCAANAGA GAANCACGTG AAGAGAGTGA ATGGAGGATT ACCAAGGTGG 
    ACAAGCAAAG AATGTCTTGA AGGGTGTTTA TNATACTCAA CTCTGATTTC 
    CCGACAAACG CAGGAAATAA ACCNTTGNTT TGGACTCTGT CCGGGGTGAG 
    GTGAGAATTG AACAAAACAA AGCCNAAACT GTTCTTCTAN CGCAAGGCCT 
    TGTTGGACCG ACNAANCTAC GAAACANTAA CAAGTCGAGA AGCT

AT3G57810.1

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Computational Description
Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G38025.1); Has 631 Blast hits to 631 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 54; Plants - 235; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G57810.2

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Computational Description
Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G38025.1); Has 624 Blast hits to 624 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 54; Plants - 235; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G57810.3

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Computational Description
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G38025.1); Has 624 Blast hits to 624 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 54; Plants - 235; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR