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54-0286-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 78025 [Map]; Strand: c
      • AT2G01080.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-0286-1 - 5-prime edge 
    TGAGCAGCAA TCGGATCGCC GTTGAGACCT GCTCTAGAAC TAGAAGGAGG 
    AGGAGGCATA GTAAGTGAAA GCAGGAAGCT CCCTCTCCCT TTTCACTCTT 
    CTTCTGTAAT AGCGGTGTTG AAATTATACA CAACAAGAGA GAGAGACCCT 
    GTTTCCGTGT CTGGACTCTA GTATTATTGA CAAATTAATG TTTCACAATT 
    TTAACCACCA ATAAAAATAT CAATAATGTA ATTTACAGCA ATTTTAGGCA 
    AATCTCACAC TCAGACAAGG GTTAGAGATG ACTCAAAAAA TGNNGGATCT 
    GATATTAAAA AAACANNCAA ATACAAACAC ACAGTTACTA TCCTTTAGTT 
    ACATCATATA AATGTATTAC GTCGTTGCTT TGTGCTATAT AGCNGACCTG 
    TNGCTGATAT TTATATNNCC GGCNNCTCTT GATCAAACAC AGATGCCAAA 
    ACNTTTGTAT ACAGACTCTC CTCACTNTNT TTTATNTNCT GNANNANNGG 
    GNTTNCNTGT NCNACTNCGG ATNNTTCTNT TGCTTAACCA ANCTNNNATN 
    TCNNTNTTGN TNACAAAAAN AAAAAAANAG NNCTTCCNCC CCCNNNNNNA 
    TAAAANNNNN NNATNTNNAT ANAANAANAN CANNAGNNNA NNTTNCCNTC 
    C

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 78141 [Map]; Strand: c
      • AT2G01080.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-0286-1 - 3-prime edge 
    GCTGCTCAGA ACCAGCAGCC GTATTACCGG AGCTACTCAT CGTCGTCGTC 
    GGCGTCGCTG AAGGGATGCT GCTGCTGCTT GTTCTTGCTG TTCGCAGTTC 
    CTGGCGCTGC TGGTACTGGC GGTGGTGCTC ATCGTAATAC TGGCGGTGAA 
    GCCGAAGAAG CCGCAGTTCG ATCTGCAGCA AGTGGCAGTG GTGTACATGG 
    GGATCTCCAA CCCAAGCGCT GTTCTGGATC

AT2G01080.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G27080.2); Has 675 Blast hits to 674 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 673; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR