1. Home
  2. Mutant Lines
  3. 54-0318-1

54-0318-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8411531 [Map]; Strand: c
      • AT5G24580.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT5G24580.2 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT5G24580.3 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-0318-1 - 5-prime edge 
    CGNGAAAAAC TAACAAAATC GGTTATACAG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCT TGTTGATGGA TATGAATGAG AACCAAGTGA 
    CGATAAAGGG AGTGTTGGAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8428086 [Map]; Strand: c
      • AT5G24610.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-0318-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACGG AATCTTCTTC CCCCACTCTG 
    CTCTTCTTCC TCTNGTNGCT ATCGTCTCTC TCTCTCGAGT CAAAATTAGG 
    GTTTCGTTTC ACTATCCAGG TATGTCTCTC TCTCTCTCTC TCTCTCTCTC 
    TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTNTNTN TNTANANANA 
    NANANANANA NNNNNNNANA NANANAAAAA AAANANAGAG AGAGNNANAN 
    ANACANNCAC ACANANANAA AAAANANANA NANAAANANA NANANANANA 
    NANANANANA NANANANAGA NANANANANA NANAAAACAC ACANANAAAA 
    AAAANANANA NAGAGAGAGA NAAAAAAAAA AANAAANAAN NNNNNGNGAG 
    AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGANAN TNTNTNCNAG 
    ANNGANAGAG AGAGAGAGAG CGNACACACN CGNGGGGGGG GNGCTCNNNA 
    AANAGAGAAA NANAGAGAGA GAGAGANANA AAAAAAAANA AANGGGGGNN 
    GAGAGNNNNA GAGAGACANA NNTATNTATN NAGNNNGAGA GAGAGAGAGA 
    NAGACANNNN AGAGAGNGTG NGAGAGANAN ANANANNGNG TGAGNGTGTG 
    NGTGNNAATA AAAAAAAGNG NNAAAAACNN AGNGAGTAAN GAGAANAAGA 
    GAACANAANA ANNAAAGNGN AAAACAGANA ANAGNCGNGN GAGAGANAGA 
    GANAGAAANN TGACTCANNA AANAG

AT5G24580.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G50740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24580.2

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G50740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24580.3

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G50740.1); Has 553 Blast hits to 416 proteins in 80 species: Archae - 0; Bacteria - 22; Metazoa - 98; Fungi - 42; Plants - 238; Viruses - 27; Other Eukaryotes - 126 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24610.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR